Literature DB >> 33325797

Relevance of the Unfolded Protein Response to Spaceflight-Induced Transcriptional Reprogramming in Arabidopsis.

Evan Angelos1, Dae Kwan Ko1,2, Starla Zemelis-Durfee1,2, Federica Brandizzi1,2,3.   

Abstract

Plants are primary producers of food and oxygen on Earth and will likewise be indispensable to the establishment of large-scale sustainable ecosystems and human survival in space. To contribute to the understanding of how plants respond to spaceflight stress, we examined the significance of the unfolded protein response (UPR), a conserved signaling cascade that responds to a number of unfavorable environmental stresses, in the model plant Arabidopsis thaliana. To do so, we performed a large-scale comparative transcriptome profiling in wild type and various UPR-defective mutants during the SpaceX-CRS12 mission to the International Space Station. We established that orbital culture substantially alters the expression of hundreds of stress-related genes compared with ground control conditions. Although expression of those genes varied in the UPR mutants on the ground, it was largely similar across the genotypes in the spaceflight condition. Our results have yielded new information on how plants respond to growth in orbit and support the hypothesis that spaceflight induces the activation of signaling pathways that compensate for the loss of UPR regulators in the control of downstream transcriptional regulatory networks.

Entities:  

Keywords:  Arabidopsis; Microgravity.; Spaceflight; Unfolded protein response

Mesh:

Substances:

Year:  2020        PMID: 33325797      PMCID: PMC7987364          DOI: 10.1089/ast.2020.2313

Source DB:  PubMed          Journal:  Astrobiology        ISSN: 1557-8070            Impact factor:   4.335


  51 in total

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2.  Variation in the transcriptome of different ecotypes of Arabidopsis thaliana reveals signatures of oxidative stress in plant responses to spaceflight.

Authors:  Won-Gyu Choi; Richard J Barker; Su-Hwa Kim; Sarah J Swanson; Simon Gilroy
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3.  Transcriptional response of Arabidopsis seedlings during spaceflight reveals peroxidase and cell wall remodeling genes associated with root hair development.

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4.  ER-Anchored Transcription Factors bZIP17 and bZIP28 Regulate Root Elongation.

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Journal:  Plant Physiol       Date:  2018-01-24       Impact factor: 8.340

5.  Growth in spaceflight hardware results in alterations to the transcriptome and proteome.

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Journal:  Life Sci Space Res (Amst)       Date:  2017-09-21

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Journal:  Nat Protoc       Date:  2019-02-25       Impact factor: 13.491

7.  Arabidopsis IRE1 catalyses unconventional splicing of bZIP60 mRNA to produce the active transcription factor.

Authors:  Yukihiro Nagashima; Kei-Ichiro Mishiba; Eiji Suzuki; Yukihisa Shimada; Yuji Iwata; Nozomu Koizumi
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Journal:  Bioinformatics       Date:  2014-09-25       Impact factor: 6.937

9.  PANTHER version 14: more genomes, a new PANTHER GO-slim and improvements in enrichment analysis tools.

Authors:  Huaiyu Mi; Anushya Muruganujan; Dustin Ebert; Xiaosong Huang; Paul D Thomas
Journal:  Nucleic Acids Res       Date:  2019-01-08       Impact factor: 16.971

10.  Evaluation of two main RNA-seq approaches for gene quantification in clinical RNA sequencing: polyA+ selection versus rRNA depletion.

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  2 in total

Review 1.  Recent transcriptomic studies to elucidate the plant adaptive response to spaceflight and to simulated space environments.

Authors:  Aránzazu Manzano; Eugénie Carnero-Diaz; Raúl Herranz; F Javier Medina
Journal:  iScience       Date:  2022-06-30

2.  Root growth direction in simulated microgravity is modulated by a light avoidance mechanism mediated by flavonols.

Authors:  Alicia Villacampa; Iris Fañanás-Pueyo; F Javier Medina; Malgorzata Ciska
Journal:  Physiol Plant       Date:  2022-05       Impact factor: 5.081

  2 in total

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