Literature DB >> 25645873

A copy number variation map of the human genome.

Mehdi Zarrei1, Jeffrey R MacDonald1, Daniele Merico1, Stephen W Scherer2.   

Abstract

A major contribution to the genome variability among individuals comes from deletions and duplications - collectively termed copy number variations (CNVs) - which alter the diploid status of DNA. These alterations may have no phenotypic effect, account for adaptive traits or can underlie disease. We have compiled published high-quality data on healthy individuals of various ethnicities to construct an updated CNV map of the human genome. Depending on the level of stringency of the map, we estimated that 4.8-9.5% of the genome contributes to CNV and found approximately 100 genes that can be completely deleted without producing apparent phenotypic consequences. This map will aid the interpretation of new CNV findings for both clinical and research applications.

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Year:  2015        PMID: 25645873     DOI: 10.1038/nrg3871

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  94 in total

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Journal:  Genome Res       Date:  2009-06-22       Impact factor: 9.043

5.  Population-genetic properties of differentiated human copy-number polymorphisms.

Authors:  Catarina D Campbell; Nick Sampas; Anya Tsalenko; Peter H Sudmant; Jeffrey M Kidd; Maika Malig; Tiffany H Vu; Laura Vives; Peter Tsang; Laurakay Bruhn; Evan E Eichler
Journal:  Am J Hum Genet       Date:  2011-03-11       Impact factor: 11.025

6.  Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls.

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Journal:  Am J Hum Genet       Date:  2009-04-02       Impact factor: 11.025

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Journal:  Trends Genet       Date:  2009-03-18       Impact factor: 11.639

9.  A systematic survey of loss-of-function variants in human protein-coding genes.

Authors:  Daniel G MacArthur; Suganthi Balasubramanian; Adam Frankish; Ni Huang; James Morris; Klaudia Walter; Luke Jostins; Lukas Habegger; Joseph K Pickrell; Stephen B Montgomery; Cornelis A Albers; Zhengdong D Zhang; Donald F Conrad; Gerton Lunter; Hancheng Zheng; Qasim Ayub; Mark A DePristo; Eric Banks; Min Hu; Robert E Handsaker; Jeffrey A Rosenfeld; Menachem Fromer; Mike Jin; Xinmeng Jasmine Mu; Ekta Khurana; Kai Ye; Mike Kay; Gary Ian Saunders; Marie-Marthe Suner; Toby Hunt; If H A Barnes; Clara Amid; Denise R Carvalho-Silva; Alexandra H Bignell; Catherine Snow; Bryndis Yngvadottir; Suzannah Bumpstead; David N Cooper; Yali Xue; Irene Gallego Romero; Jun Wang; Yingrui Li; Richard A Gibbs; Steven A McCarroll; Emmanouil T Dermitzakis; Jonathan K Pritchard; Jeffrey C Barrett; Jennifer Harrow; Matthew E Hurles; Mark B Gerstein; Chris Tyler-Smith
Journal:  Science       Date:  2012-02-17       Impact factor: 47.728

10.  Bias of selection on human copy-number variants.

Authors:  Duc-Quang Nguyen; Caleb Webber; Chris P Ponting
Journal:  PLoS Genet       Date:  2006-02-17       Impact factor: 5.917

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4.  Complex DNA structures trigger copy number variation across the Plasmodium falciparum genome.

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5.  19p13 microduplications encompassing NFIX are responsible for intellectual disability, short stature and small head circumference.

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7.  Neurons with Complex Karyotypes Are Rare in Aged Human Neocortex.

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8.  An accurate and powerful method for copy number variation detection.

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Review 9.  Implications of germline copy-number variations in psychiatric disorders: review of large-scale genetic studies.

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10.  Heterozygote Advantage Is a Common Outcome of Adaptation in Saccharomyces cerevisiae.

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