Literature DB >> 32958875

Implications of germline copy-number variations in psychiatric disorders: review of large-scale genetic studies.

Masahiro Nakatochi1, Itaru Kushima2,3, Norio Ozaki2,3.   

Abstract

Copy number variants (CNVs), defined as genome sequences of ≥50 bp that differ in copy number from that in a reference genome, are a common form of structural variation. Germline CNVs account for some of the missing heritability that single nucleotide polymorphisms could not account for. Recent technological advances have had a huge impact on CNV research. Microarray technology enables relatively low-cost, high-throughput, genome-wide measurements, and short-read sequencing technology enables the detection of short CNVs that cannot be detected by microarrays. As a result, large-scale genetic studies have been able to identify a variety of common and rare germline CNVs and their associations with diseases. Rare germline CNVs have been reported to be associated with neuropsychiatric disorders. In this review, we focused on germline CNVs and briefly described their functional characteristics, formation mechanisms, detection methods, related databases, and the latest findings. Finally, we introduced recent large-scale genetic studies to assess associations of CNVs with diseases, especially psychiatric disorders, and discussed the use of CNV-based animal models to investigate the molecular and cellular mechanisms underlying these disorders. The development and implementation of improved detection methods, such as long-read single-molecule sequencing, are expected to provide additional insight into the molecular basis of psychiatric disorders and other complex diseases, thus facilitating basic and clinical research on CNVs.

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Year:  2020        PMID: 32958875     DOI: 10.1038/s10038-020-00838-1

Source DB:  PubMed          Journal:  J Hum Genet        ISSN: 1434-5161            Impact factor:   3.172


  101 in total

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Review 4.  Mechanisms underlying structural variant formation in genomic disorders.

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Journal:  Nat Rev Genet       Date:  2016-02-29       Impact factor: 53.242

5.  Analysis of genetic inheritance in a family quartet by whole-genome sequencing.

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Journal:  Science       Date:  2010-03-10       Impact factor: 47.728

6.  De novo rates and selection of large copy number variation.

Authors:  Andy Itsara; Hao Wu; Joshua D Smith; Deborah A Nickerson; Isabelle Romieu; Stephanie J London; Evan E Eichler
Journal:  Genome Res       Date:  2010-09-14       Impact factor: 9.043

Review 7.  Mechanisms of change in gene copy number.

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Journal:  Nat Rev Genet       Date:  2009-08       Impact factor: 53.242

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Journal:  Nature       Date:  2009-10-07       Impact factor: 49.962

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Journal:  Nature       Date:  2015-10-01       Impact factor: 49.962

10.  The impact of structural variation on human gene expression.

Authors:  Colby Chiang; Alexandra J Scott; Joe R Davis; Emily K Tsang; Xin Li; Yungil Kim; Tarik Hadzic; Farhan N Damani; Liron Ganel; Stephen B Montgomery; Alexis Battle; Donald F Conrad; Ira M Hall
Journal:  Nat Genet       Date:  2017-04-03       Impact factor: 38.330

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  8 in total

Review 1.  The genetic architecture of schizophrenia: review of large-scale genetic studies.

Authors:  Hidekazu Kato; Hiroki Kimura; Itaru Kushima; Nagahide Takahashi; Branko Aleksic; Norio Ozaki
Journal:  J Hum Genet       Date:  2022-07-12       Impact factor: 3.755

2.  Exome sequencing analysis of Japanese autism spectrum disorder case-control sample supports an increased burden of synaptic function-related genes.

Authors:  Norio Ozaki; Jonathan Sebat; Hiroki Kimura; Masahiro Nakatochi; Branko Aleksic; James Guevara; Miho Toyama; Yu Hayashi; Hidekazu Kato; Itaru Kushima; Mako Morikawa; Kanako Ishizuka; Takashi Okada; Yoshinori Tsurusaki; Atsushi Fujita; Noriko Miyake; Tomoo Ogi; Atsushi Takata; Naomichi Matsumoto; Joseph Buxbaum
Journal:  Transl Psychiatry       Date:  2022-07-11       Impact factor: 7.989

3.  Dysregulation of post-transcriptional modification by copy number variable microRNAs in schizophrenia with enhanced glycation stress.

Authors:  Akane Yoshikawa; Itaru Kushima; Mitsuhiro Miyashita; Kazuya Toriumi; Kazuhiro Suzuki; Yasue Horiuchi; Hideya Kawaji; Shunya Takizawa; Norio Ozaki; Masanari Itokawa; Makoto Arai
Journal:  Transl Psychiatry       Date:  2021-05-28       Impact factor: 6.222

Review 4.  Emerging roles of rare and low-frequency genetic variants in type 1 diabetes mellitus.

Authors:  Haipeng Pang; Ying Xia; Shuoming Luo; Gan Huang; Xia Li; Zhiguo Xie; Zhiguang Zhou
Journal:  J Med Genet       Date:  2021-03-22       Impact factor: 6.318

5.  Rare genetic variants in the gene encoding histone lysine demethylase 4C (KDM4C) and their contributions to susceptibility to schizophrenia and autism spectrum disorder.

Authors:  Hidekazu Kato; Itaru Kushima; Daisuke Mori; Akira Yoshimi; Branko Aleksic; Yoshihiro Nawa; Miho Toyama; Sho Furuta; Yanjie Yu; Kanako Ishizuka; Hiroki Kimura; Yuko Arioka; Keita Tsujimura; Mako Morikawa; Takashi Okada; Toshiya Inada; Masahiro Nakatochi; Keiko Shinjo; Yutaka Kondo; Kozo Kaibuchi; Yasuko Funabiki; Ryo Kimura; Toshimitsu Suzuki; Kazuhiro Yamakawa; Masashi Ikeda; Nakao Iwata; Tsutomu Takahashi; Michio Suzuki; Yuko Okahisa; Manabu Takaki; Jun Egawa; Toshiyuki Someya; Norio Ozaki
Journal:  Transl Psychiatry       Date:  2020-12-05       Impact factor: 6.222

6.  Translational Study of Copy Number Variations in Schizophrenia.

Authors:  Min-Chih Cheng; Wei-Hsien Chien; Yu-Shu Huang; Ting-Hsuan Fang; Chia-Hsiang Chen
Journal:  Int J Mol Sci       Date:  2021-12-31       Impact factor: 5.923

Review 7.  Trends in big data analyses by multicenter collaborative translational research in psychiatry.

Authors:  Toshiaki Onitsuka; Yoji Hirano; Kiyotaka Nemoto; Naoki Hashimoto; Itaru Kushima; Daisuke Koshiyama; Michihiko Koeda; Tsutomu Takahashi; Yoshihiro Noda; Junya Matsumoto; Kenichiro Miura; Takanobu Nakazawa; Takatoshi Hikida; Kiyoto Kasai; Norio Ozaki; Ryota Hashimoto
Journal:  Psychiatry Clin Neurosci       Date:  2022-01       Impact factor: 12.145

Review 8.  Genetics of autosomal mosaic chromosomal alteration (mCA).

Authors:  Xiaoxi Liu; Yoichiro Kamatani; Chikashi Terao
Journal:  J Hum Genet       Date:  2021-07-28       Impact factor: 3.172

  8 in total

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