Literature DB >> 25640595

Ubiquitous transcription factors display structural plasticity and diverse functions: NusG proteins - Shifting shapes and paradigms.

Monali NandyMazumdar1, Irina Artsimovitch.   

Abstract

Numerous accessory factors modulate RNA polymerase response to regulatory signals and cellular cues and establish communications with co-transcriptional RNA processing. Transcription regulators are astonishingly diverse, with similar mechanisms arising via convergent evolution. NusG/Spt5 elongation factors comprise the only universally conserved and ancient family of regulators. They bind to the conserved clamp helices domain of RNA polymerase, which also interacts with non-homologous initiation factors in all domains of life, and reach across the DNA channel to form processivity clamps that enable uninterrupted RNA chain synthesis. In addition to this ubiquitous function, NusG homologs exert diverse, and sometimes opposite, effects on gene expression by competing with each other and other regulators for binding to the clamp helices and by recruiting auxiliary factors that facilitate termination, antitermination, splicing, translation, etc. This surprisingly diverse range of activities and the underlying unprecedented structural changes make studies of these "transformer" proteins both challenging and rewarding.
© 2015 WILEY Periodicals, Inc.

Entities:  

Keywords:  NusG; RfaH; antitermination; refolding; transcription; translation

Mesh:

Substances:

Year:  2015        PMID: 25640595      PMCID: PMC4334689          DOI: 10.1002/bies.201400177

Source DB:  PubMed          Journal:  Bioessays        ISSN: 0265-9247            Impact factor:   4.345


  116 in total

1.  Transcriptional arrest: Escherichia coli RNA polymerase translocates backward, leaving the 3' end of the RNA intact and extruded.

Authors:  N Komissarova; M Kashlev
Journal:  Proc Natl Acad Sci U S A       Date:  1997-03-04       Impact factor: 11.205

Review 2.  The complex choreography of transcription-coupled repair.

Authors:  Graciela Spivak; Ann K Ganesan
Journal:  DNA Repair (Amst)       Date:  2014-04-19

Review 3.  Terminator still moving forward: expanding roles for Rho factor.

Authors:  Marc Boudvillain; Nara Figueroa-Bossi; Lionello Bossi
Journal:  Curr Opin Microbiol       Date:  2013-01-21       Impact factor: 7.934

4.  Enhancing transcription through the Escherichia coli hemolysin operon, hlyCABD: RfaH and upstream JUMPStart DNA sequences function together via a postinitiation mechanism.

Authors:  J A Leeds; R A Welch
Journal:  J Bacteriol       Date:  1997-06       Impact factor: 3.490

5.  An autoinhibited state in the structure of Thermotoga maritima NusG.

Authors:  Johanna Drögemüller; Christian M Stegmann; Angshuman Mandal; Thomas Steiner; Björn M Burmann; Max E Gottesman; Birgitta M Wöhrl; Paul Rösch; Markus C Wahl; Kristian Schweimer
Journal:  Structure       Date:  2013-02-14       Impact factor: 5.006

6.  High-resolution localization of Drosophila Spt5 and Spt6 at heat shock genes in vivo: roles in promoter proximal pausing and transcription elongation.

Authors:  E D Andrulis; E Guzmán; P Döring; J Werner; J T Lis
Journal:  Genes Dev       Date:  2000-10-15       Impact factor: 11.361

7.  Autogenous regulation of transcription termination factor Rho and the requirement for Nus factors in Bacillus subtilis.

Authors:  C J Ingham; J Dennis; P A Furneaux
Journal:  Mol Microbiol       Date:  1999-01       Impact factor: 3.501

8.  Purification and molecular cloning of a butyrolactone autoregulator receptor from Streptomyces virginiae.

Authors:  S Okamoto; T Nihira; H Kataoka; A Suzuki; Y Yamada
Journal:  J Biol Chem       Date:  1992-01-15       Impact factor: 5.157

9.  The C-terminal repeat domain of Spt5 plays an important role in suppression of Rad26-independent transcription coupled repair.

Authors:  Baojin Ding; Danielle LeJeune; Shisheng Li
Journal:  J Biol Chem       Date:  2009-12-30       Impact factor: 5.157

Review 10.  The AID-induced DNA damage response in chromatin.

Authors:  Jeremy A Daniel; André Nussenzweig
Journal:  Mol Cell       Date:  2013-05-09       Impact factor: 17.970

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  15 in total

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Authors:  Aneeshkumar G Arimbasseri; Richard J Maraia
Journal:  RNA Biol       Date:  2015-12-04       Impact factor: 4.652

Review 2.  Bacterial Transcription as a Target for Antibacterial Drug Development.

Authors:  Cong Ma; Xiao Yang; Peter J Lewis
Journal:  Microbiol Mol Biol Rev       Date:  2016-01-13       Impact factor: 11.056

3.  LoaP is a broadly conserved antiterminator protein that regulates antibiotic gene clusters in Bacillus amyloliquefaciens.

Authors:  Jonathan R Goodson; Steven Klupt; Chengxi Zhang; Paul Straight; Wade C Winkler
Journal:  Nat Microbiol       Date:  2017-02-13       Impact factor: 17.745

Review 4.  Processive Antitermination.

Authors:  Jonathan R Goodson; Wade C Winkler
Journal:  Microbiol Spectr       Date:  2018-09

5.  Thermotoga maritima NusG: domain interaction mediates autoinhibition and thermostability.

Authors:  Johanna Drögemüller; Christin Schneider; Kristian Schweimer; Martin Strauß; Birgitta M Wöhrl; Paul Rösch; Stefan H Knauer
Journal:  Nucleic Acids Res       Date:  2016-11-29       Impact factor: 16.971

6.  Reading of the non-template DNA by transcription elongation factors.

Authors:  Vladimir Svetlov; Evgeny Nudler
Journal:  Mol Microbiol       Date:  2018-08       Impact factor: 3.501

7.  Complex Control of a Genomic Island Governing Biofilm and Rugose Colony Development in Vibrio vulnificus.

Authors:  Daniel M Chodur; Dean A Rowe-Magnus
Journal:  J Bacteriol       Date:  2018-07-25       Impact factor: 3.490

8.  Structure of a transcribing RNA polymerase II-DSIF complex reveals a multidentate DNA-RNA clamp.

Authors:  Carrie Bernecky; Jürgen M Plitzko; Patrick Cramer
Journal:  Nat Struct Mol Biol       Date:  2017-09-11       Impact factor: 15.369

9.  A meiosis-specific Spt5 homolog involved in non-coding transcription.

Authors:  Julita Gruchota; Cyril Denby Wilkes; Olivier Arnaiz; Linda Sperling; Jacek K Nowak
Journal:  Nucleic Acids Res       Date:  2017-05-05       Impact factor: 16.971

10.  Ratcheting of RNA polymerase toward structural principles of RNA polymerase operations.

Authors:  Shun-ichi Sekine; Yuko Murayama; Vladimir Svetlov; Evgeny Nudler; Shigeyuki Yokoyama
Journal:  Transcription       Date:  2015
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