Literature DB >> 25620001

Structural plasticity of helical nanotubes based on coiled-coil assemblies.

E H Egelman1, C Xu2, F DiMaio3, E Magnotti2, C Modlin2, X Yu4, E Wright5, D Baker3, V P Conticello6.   

Abstract

Numerous instances can be seen in evolution in which protein quaternary structures have diverged while the sequences of the building blocks have remained fairly conserved. However, the path through which such divergence has taken place is usually not known. We have designed two synthetic 29-residue α-helical peptides, based on the coiled-coil structural motif, that spontaneously self-assemble into helical nanotubes in vitro. Using electron cryomicroscopy with a newly available direct electron detection capability, we can achieve near-atomic resolution of these thin structures. We show how conservative changes of only one or two amino acids result in dramatic changes in quaternary structure, in which the assemblies can be switched between two very different forms. This system provides a framework for understanding how small sequence changes in evolution can translate into very large changes in supramolecular structure, a phenomenon that may have significant implications for the de novo design of synthetic peptide assemblies.
Copyright © 2015 Elsevier Ltd. All rights reserved.

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Year:  2015        PMID: 25620001      PMCID: PMC4318749          DOI: 10.1016/j.str.2014.12.008

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  49 in total

1.  Optimal determination of particle orientation, absolute hand, and contrast loss in single-particle electron cryomicroscopy.

Authors:  Peter B Rosenthal; Richard Henderson
Journal:  J Mol Biol       Date:  2003-10-31       Impact factor: 5.469

2.  Three-dimensional reconstruction of single particles embedded in ice.

Authors:  P Penczek; M Radermacher; J Frank
Journal:  Ultramicroscopy       Date:  1992-01       Impact factor: 2.689

3.  Type IV pilus structure by cryo-electron microscopy and crystallography: implications for pilus assembly and functions.

Authors:  Lisa Craig; Niels Volkmann; Andrew S Arvai; Michael E Pique; Mark Yeager; Edward H Egelman; John A Tainer
Journal:  Mol Cell       Date:  2006-09-01       Impact factor: 17.970

4.  A seven-helix coiled coil.

Authors:  Jie Liu; Qi Zheng; Yiqun Deng; Chao-Sheng Cheng; Neville R Kallenbach; Min Lu
Journal:  Proc Natl Acad Sci U S A       Date:  2006-10-09       Impact factor: 11.205

Review 5.  The collagen fibril: the almost crystalline structure.

Authors:  D J Prockop; A Fertala
Journal:  J Struct Biol       Date:  1998       Impact factor: 2.867

6.  SPIDER and WEB: processing and visualization of images in 3D electron microscopy and related fields.

Authors:  J Frank; M Radermacher; P Penczek; J Zhu; Y Li; M Ladjadj; A Leith
Journal:  J Struct Biol       Date:  1996 Jan-Feb       Impact factor: 2.867

7.  Calculation of protein extinction coefficients from amino acid sequence data.

Authors:  S C Gill; P H von Hippel
Journal:  Anal Biochem       Date:  1989-11-01       Impact factor: 3.365

8.  F-actin is a helix with a random variable twist.

Authors:  E H Egelman; N Francis; D J DeRosier
Journal:  Nature       Date:  1982-07-08       Impact factor: 49.962

9.  The structure of a filamentous bacteriophage.

Authors:  Ying A Wang; Xiong Yu; Stacy Overman; Masamichi Tsuboi; George J Thomas; Edward H Egelman
Journal:  J Mol Biol       Date:  2006-06-30       Impact factor: 5.469

10.  Ambiguities in helical reconstruction.

Authors:  Edward H Egelman
Journal:  Elife       Date:  2014-12-08       Impact factor: 8.140

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  39 in total

Review 1.  Supramolecular Hydrogelators and Hydrogels: From Soft Matter to Molecular Biomaterials.

Authors:  Xuewen Du; Jie Zhou; Junfeng Shi; Bing Xu
Journal:  Chem Rev       Date:  2015-12-08       Impact factor: 60.622

2.  A Supramolecular Vaccine Platform Based on α-Helical Peptide Nanofibers.

Authors:  Yaoying Wu; Pamela K Norberg; Elizabeth A Reap; Kendra L Congdon; Chelsea N Fries; Sean H Kelly; John H Sampson; Vincent P Conticello; Joel H Collier
Journal:  ACS Biomater Sci Eng       Date:  2017-09-11

3.  Ambidextrous helical nanotubes from self-assembly of designed helical hairpin motifs.

Authors:  Spencer A Hughes; Fengbin Wang; Shengyuan Wang; Mark A B Kreutzberger; Tomasz Osinski; Albina Orlova; Joseph S Wall; Xiaobing Zuo; Edward H Egelman; Vincent P Conticello
Journal:  Proc Natl Acad Sci U S A       Date:  2019-07-01       Impact factor: 11.205

4.  Cyclic oligomer design with de novo αβ-proteins.

Authors:  Yu-Ru Lin; Nobuyasu Koga; Sergey M Vorobiev; David Baker
Journal:  Protein Sci       Date:  2017-11       Impact factor: 6.725

5.  Structure-Function Analysis of the ϕX174 DNA-Piloting Protein Using Length-Altering Mutations.

Authors:  Aaron P Roznowski; Bentley A Fane
Journal:  J Virol       Date:  2016-08-12       Impact factor: 5.103

6.  Archaeal flagellin combines a bacterial type IV pilin domain with an Ig-like domain.

Authors:  Tatjana Braun; Matthijn R Vos; Nir Kalisman; Nicholas E Sherman; Reinhard Rachel; Reinhard Wirth; Gunnar F Schröder; Edward H Egelman
Journal:  Proc Natl Acad Sci U S A       Date:  2016-08-30       Impact factor: 11.205

7.  Flagellar Structures from the Bacterium Caulobacter crescentus and Implications for Phage ϕ CbK Predation of Multiflagellin Bacteria.

Authors:  Eric J Montemayor; Nicoleta T Ploscariu; Juan C Sanchez; Daniel Parrell; Rebecca S Dillard; Conrad W Shebelut; Zunlong Ke; Ricardo C Guerrero-Ferreira; Elizabeth R Wright
Journal:  J Bacteriol       Date:  2021-02-08       Impact factor: 3.490

Review 8.  Three-dimensional reconstruction of helical polymers.

Authors:  Edward H Egelman
Journal:  Arch Biochem Biophys       Date:  2015-04-22       Impact factor: 4.013

Review 9.  Biomolecular Assemblies: Moving from Observation to Predictive Design.

Authors:  Corey J Wilson; Andreas S Bommarius; Julie A Champion; Yury O Chernoff; David G Lynn; Anant K Paravastu; Chen Liang; Ming-Chien Hsieh; Jennifer M Heemstra
Journal:  Chem Rev       Date:  2018-10-03       Impact factor: 60.622

10.  Designed, Helical Protein Nanotubes with Variable Diameters from a Single Building Block.

Authors:  Jeffrey D Brodin; Sarah J Smith; Jessica R Carr; F Akif Tezcan
Journal:  J Am Chem Soc       Date:  2015-08-13       Impact factor: 15.419

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