Literature DB >> 25618617

Whole genome sequences of 2 octogenarians with sustained cognitive abilities.

Dorothee Nickles1, Lohith Madireddy1, Nihar Patel2, Noriko Isobe1, Bruce L Miller2, Sergio E Baranzini1, Joel H Kramer3, Jorge R Oksenberg4.   

Abstract

Although numerous genetic variants affecting aging and mortality have been identified, for example, apolipoprotein E ε4, the genetic component influencing cognitive aging has not been fully defined yet. A better knowledge of the genetics of aging will prove helpful in understanding the underlying biological processes. Here, we describe the whole genome sequences of 2 female octogenarians. We provide the repertoire of genomic variants that the 2 octogenarians have in common. We also describe the overlap with the previously reported genomes of 2 supercentenarians—individuals aged ≥110 years. We assessed the genetic disease propensities of the octogenarians and non-aged control genomes and could not find support for the hypothesis that long-lived healthy individuals might exhibit greater genetic fitness than the general population. Furthermore, there is no evidence for an accumulation of previously described variants promoting longevity in the 2 octogenarians. These findings suggest that genetic fitness, as currently defined, is not the sole factor enabling an increased life span. We identified a number of healthy-cognitive-aging candidate genetic loci awaiting confirmation in larger studies.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  APOEε4; Aging; Cognition; Genetics; Next generation sequencing; Personalized medicine

Mesh:

Substances:

Year:  2014        PMID: 25618617      PMCID: PMC4346472          DOI: 10.1016/j.neurobiolaging.2014.11.003

Source DB:  PubMed          Journal:  Neurobiol Aging        ISSN: 0197-4580            Impact factor:   4.673


  16 in total

1.  Health span approximates life span among many supercentenarians: compression of morbidity at the approximate limit of life span.

Authors:  Stacy L Andersen; Paola Sebastiani; Daniel A Dworkis; Lori Feldman; Thomas T Perls
Journal:  J Gerontol A Biol Sci Med Sci       Date:  2012-01-04       Impact factor: 6.053

2.  Genome-wide association study (GWAS)-identified disease risk alleles do not compromise human longevity.

Authors:  Marian Beekman; Christa Nederstigt; H Eka D Suchiman; Dennis Kremer; Ruud van der Breggen; Nico Lakenberg; Wendimagegn Ghidey Alemayehu; Anton J M de Craen; Rudi G J Westendorp; Dorret I Boomsma; Eco J C de Geus; Jeanine J Houwing-Duistermaat; Bastiaan T Heijmans; P Eline Slagboom
Journal:  Proc Natl Acad Sci U S A       Date:  2010-10-04       Impact factor: 11.205

3.  Large common deletions associate with mortality at old age.

Authors:  Maris Kuningas; Karol Estrada; Yi-Hsiang Hsu; Kannabiran Nandakumar; André G Uitterlinden; Kathryn L Lunetta; Cornelia M van Duijn; David Karasik; Albert Hofman; Joanne Murabito; Fernando Rivadeneira; Douglas P Kiel; Henning Tiemeier
Journal:  Hum Mol Genet       Date:  2011-08-11       Impact factor: 6.150

4.  LongevityMap: a database of human genetic variants associated with longevity.

Authors:  Arie Budovsky; Thomas Craig; Jingwei Wang; Robi Tacutu; Attila Csordas; Joana Lourenço; Vadim E Fraifeld; João Pedro de Magalhães
Journal:  Trends Genet       Date:  2013-08-30       Impact factor: 11.639

Review 5.  The impact of genetic research on our understanding of normal cognitive ageing: 1995 to 2009.

Authors:  Antony Payton
Journal:  Neuropsychol Rev       Date:  2009-09-19       Impact factor: 7.444

6.  Whole genome sequences of a male and female supercentenarian, ages greater than 114 years.

Authors:  Paola Sebastiani; Alberto Riva; Monty Montano; Phillip Pham; Ali Torkamani; Eugene Scherba; Gary Benson; Jacqueline N Milton; Clinton T Baldwin; Stacy Andersen; Nicholas J Schork; Martin H Steinberg; Thomas T Perls
Journal:  Front Genet       Date:  2012-01-03       Impact factor: 4.599

7.  VAAST 2.0: improved variant classification and disease-gene identification using a conservation-controlled amino acid substitution matrix.

Authors:  Hao Hu; Chad D Huff; Barry Moore; Steven Flygare; Martin G Reese; Mark Yandell
Journal:  Genet Epidemiol       Date:  2013-07-08       Impact factor: 2.135

8.  The NHGRI GWAS Catalog, a curated resource of SNP-trait associations.

Authors:  Danielle Welter; Jacqueline MacArthur; Joannella Morales; Tony Burdett; Peggy Hall; Heather Junkins; Alan Klemm; Paul Flicek; Teri Manolio; Lucia Hindorff; Helen Parkinson
Journal:  Nucleic Acids Res       Date:  2013-12-06       Impact factor: 16.971

9.  Identifying the genomic determinants of aging and longevity in human population studies: progress and challenges.

Authors:  Joris Deelen; Marian Beekman; Miriam Capri; Claudio Franceschi; P Eline Slagboom
Journal:  Bioessays       Date:  2013-02-19       Impact factor: 4.345

10.  ClinVar: public archive of relationships among sequence variation and human phenotype.

Authors:  Melissa J Landrum; Jennifer M Lee; George R Riley; Wonhee Jang; Wendy S Rubinstein; Deanna M Church; Donna R Maglott
Journal:  Nucleic Acids Res       Date:  2013-11-14       Impact factor: 16.971

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