Literature DB >> 25616362

Pseudouridine: still mysterious, but never a fake (uridine)!

Felix Spenkuch1, Yuri Motorin, Mark Helm.   

Abstract

Pseudouridine (Ψ) is the most abundant of >150 nucleoside modifications in RNA. Although Ψ was discovered as the first modified nucleoside more than half a century ago, neither the enzymatic mechanism of its formation, nor the function of this modification are fully elucidated. We present the consistent picture of Ψ synthases, their substrates and their substrate positions in model organisms of all domains of life as it has emerged to date and point out the challenges that remain concerning higher eukaryotes and the elucidation of the enzymatic mechanism.

Entities:  

Keywords:  E. coli, Escherichia coli; H. volcanii, Haloferax volcanii and/or Halobacterium volcanii.; Pus, pseudouridine synthase; RNA Modification; S. cerevisiae, Saccharomyces cerevisiae; S. typhimurium, Salmonella typhimurium; enzymatic mechanism; modified nucleoside; pseudouridine; rRNA; rRNA, ribosomal RNA; regulation; snRNA; snRNA, small nuclear RNA; tRNA; Ψ, Psi, pseudouridine

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Substances:

Year:  2014        PMID: 25616362      PMCID: PMC4615568          DOI: 10.4161/15476286.2014.992278

Source DB:  PubMed          Journal:  RNA Biol        ISSN: 1547-6286            Impact factor:   4.652


  204 in total

1.  Crystal structure of pseudouridine synthase RluA: indirect sequence readout through protein-induced RNA structure.

Authors:  Charmaine Hoang; Junjun Chen; Caroline A Vizthum; Jason M Kandel; Christopher S Hamilton; Eugene G Mueller; Adrian R Ferré-D'Amaré
Journal:  Mol Cell       Date:  2006-11-17       Impact factor: 17.970

2.  Use of DNAzymes for site-specific analysis of ribonucleotide modifications.

Authors:  Martin Hengesbach; Madeleine Meusburger; Frank Lyko; Mark Helm
Journal:  RNA       Date:  2007-11-12       Impact factor: 4.942

3.  Crystal structure of human Pus10, a novel pseudouridine synthase.

Authors:  Clare J McCleverty; Michael Hornsby; Glen Spraggon; Andreas Kreusch
Journal:  J Mol Biol       Date:  2007-08-29       Impact factor: 5.469

4.  Molecular identification of pseudouridine-metabolizing enzymes.

Authors:  Alice Preumont; Karim Snoussi; Vincent Stroobant; Jean-François Collet; Emile Van Schaftingen
Journal:  J Biol Chem       Date:  2008-06-30       Impact factor: 5.157

Review 5.  Ribosomal RNA pseudouridines and pseudouridine synthases.

Authors:  James Ofengand
Journal:  FEBS Lett       Date:  2002-03-06       Impact factor: 4.124

6.  Comparison of solution conformations and stabilities of modified helix 69 rRNA analogs from bacteria and human.

Authors:  Minako Sumita; Jun Jiang; John SantaLucia; Christine S Chow
Journal:  Biopolymers       Date:  2011-08-19       Impact factor: 2.505

7.  Pseudouridine mapping in the Saccharomyces cerevisiae spliceosomal U small nuclear RNAs (snRNAs) reveals that pseudouridine synthase pus1p exhibits a dual substrate specificity for U2 snRNA and tRNA.

Authors:  S Massenet; Y Motorin; D L Lafontaine; E C Hurt; H Grosjean; C Branlant
Journal:  Mol Cell Biol       Date:  1999-03       Impact factor: 4.272

8.  Interactions of transfer RNA pseudouridine synthases with RNAs substituted with fluorouracil.

Authors:  T Samuelsson
Journal:  Nucleic Acids Res       Date:  1991-11-25       Impact factor: 16.971

9.  Different sensitivity of H69 modification enzymes RluD and RlmH to mutations in Escherichia coli 23S rRNA.

Authors:  Margus Leppik; Rya Ero; Aivar Liiv; Kalle Kipper; Jaanus Remme
Journal:  Biochimie       Date:  2012-05       Impact factor: 4.079

10.  Intron-dependent formation of pseudouridines in the anticodon of Saccharomyces cerevisiae minor tRNA(Ile).

Authors:  Z Szweykowska-Kulinska; B Senger; G Keith; F Fasiolo; H Grosjean
Journal:  EMBO J       Date:  1994-10-03       Impact factor: 11.598

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  78 in total

Review 1.  Pseudouridine as a novel biomarker in prostate cancer.

Authors:  Jennifer A Stockert; Rachel Weil; Kamlesh K Yadav; Natasha Kyprianou; Ashutosh K Tewari
Journal:  Urol Oncol       Date:  2020-07-22       Impact factor: 3.498

2.  N 6-Methyladenosine modification of hepatitis B and C viral RNAs attenuates host innate immunity via RIG-I signaling.

Authors:  Geon-Woo Kim; Hasan Imam; Mohsin Khan; Aleem Siddiqui
Journal:  J Biol Chem       Date:  2020-07-27       Impact factor: 5.157

3.  Distinct Modified Nucleosides in tRNATrp from the Hyperthermophilic Archaeon Thermococcus kodakarensis and Requirement of tRNA m2G10/m2 2G10 Methyltransferase (Archaeal Trm11) for Survival at High Temperatures.

Authors:  Akira Hirata; Takeo Suzuki; Tomoko Nagano; Daishiro Fujii; Mizuki Okamoto; Manaka Sora; Todd M Lowe; Tamotsu Kanai; Haruyuki Atomi; Tsutomu Suzuki; Hiroyuki Hori
Journal:  J Bacteriol       Date:  2019-10-04       Impact factor: 3.490

4.  PUS7 mutations impair pseudouridylation in humans and cause intellectual disability and microcephaly.

Authors:  Ranad Shaheen; Monika Tasak; Sateesh Maddirevula; Ghada M H Abdel-Salam; Inas S M Sayed; Anas M Alazami; Tarfa Al-Sheddi; Eman Alobeid; Eric M Phizicky; Fowzan S Alkuraya
Journal:  Hum Genet       Date:  2019-02-18       Impact factor: 4.132

Review 5.  Detecting RNA modifications in the epitranscriptome: predict and validate.

Authors:  Mark Helm; Yuri Motorin
Journal:  Nat Rev Genet       Date:  2017-02-20       Impact factor: 53.242

Review 6.  Regulation of Mammalian Mitochondrial Gene Expression: Recent Advances.

Authors:  Sarah F Pearce; Pedro Rebelo-Guiomar; Aaron R D'Souza; Christopher A Powell; Lindsey Van Haute; Michal Minczuk
Journal:  Trends Biochem Sci       Date:  2017-03-09       Impact factor: 13.807

7.  Pseudouridine in the Anticodon of Escherichia coli tRNATyr(QΨA) Is Catalyzed by the Dual Specificity Enzyme RluF.

Authors:  Balasubrahmanyam Addepalli; Patrick A Limbach
Journal:  J Biol Chem       Date:  2016-08-22       Impact factor: 5.157

8.  Validation of a Metabolite Panel for a More Accurate Estimation of Glomerular Filtration Rate Using Quantitative LC-MS/MS.

Authors:  Tiffany A Freed; Josef Coresh; Lesley A Inker; Douglas R Toal; Regis Perichon; Jingsha Chen; Kelli D Goodman; Qibo Zhang; Jessie K Conner; Deirdre M Hauser; Kate E T Vroom; Maria L Oyaski; Jacob E Wulff; Gudný Eiríksdóttir; Vilmundur Gudnason; Vicente E Torres; Lisa A Ford; Andrew S Levey
Journal:  Clin Chem       Date:  2019-01-15       Impact factor: 8.327

Review 9.  Transcriptome-wide dynamics of RNA pseudouridylation.

Authors:  John Karijolich; Chengqi Yi; Yi-Tao Yu
Journal:  Nat Rev Mol Cell Biol       Date:  2015-08-19       Impact factor: 94.444

Review 10.  Regulation and Function of RNA Pseudouridylation in Human Cells.

Authors:  Erin K Borchardt; Nicole M Martinez; Wendy V Gilbert
Journal:  Annu Rev Genet       Date:  2020-09-01       Impact factor: 16.830

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