Literature DB >> 32870730

Regulation and Function of RNA Pseudouridylation in Human Cells.

Erin K Borchardt1, Nicole M Martinez1, Wendy V Gilbert1.   

Abstract

Recent advances in pseudouridine detection reveal a complex pseudouridine landscape that includes messenger RNA and diverse classes of noncoding RNA in human cells. The known molecular functions of pseudouridine, which include stabilizing RNA conformations and destabilizing interactions with varied RNA-binding proteins, suggest that RNA pseudouridylation could have widespread effects on RNA metabolism and gene expression. Here, we emphasize how much remains to be learned about the RNA targets of human pseudouridine synthases, their basis for recognizing distinct RNA sequences, and the mechanisms responsible for regulated RNA pseudouridylation. We also examine the roles of noncoding RNA pseudouridylation in splicing and translation and point out the potential effects of mRNA pseudouridylation on protein production, including in the context of therapeutic mRNAs.

Entities:  

Keywords:  RNA modification; innate immunity; mRNA; pseudouridine; snRNA; tRNA; translation

Mesh:

Substances:

Year:  2020        PMID: 32870730      PMCID: PMC8007080          DOI: 10.1146/annurev-genet-112618-043830

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  168 in total

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Review 2.  Pseudouridine synthases.

Authors:  Tomoko Hamma; Adrian R Ferré-D'Amaré
Journal:  Chem Biol       Date:  2006-11

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Authors:  P L Raghunathan; C Guthrie
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4.  Pseudouridines in U2 snRNA stimulate the ATPase activity of Prp5 during spliceosome assembly.

Authors:  Guowei Wu; Hironori Adachi; Junhui Ge; David Stephenson; Charles C Query; Yi-Tao Yu
Journal:  EMBO J       Date:  2016-02-12       Impact factor: 11.598

5.  rRNA pseudouridylation defects affect ribosomal ligand binding and translational fidelity from yeast to human cells.

Authors:  Karen Jack; Cristian Bellodi; Dori M Landry; Rachel O Niederer; Arturas Meskauskas; Sharmishtha Musalgaonkar; Noam Kopmar; Olya Krasnykh; Alison M Dean; Sunnie R Thompson; Davide Ruggero; Jonathan D Dinman
Journal:  Mol Cell       Date:  2011-11-18       Impact factor: 17.970

6.  Binding of aminoglycoside antibiotics to helix 69 of 23S rRNA.

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7.  Proteomic mapping of mitochondria in living cells via spatially restricted enzymatic tagging.

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Journal:  J Virol       Date:  2009-02-18       Impact factor: 5.103

9.  Pseudouridinylation of mRNA coding sequences alters translation.

Authors:  Daniel E Eyler; Monika K Franco; Zahra Batool; Monica Z Wu; Michelle L Dubuke; Malgorzata Dobosz-Bartoszek; Joshua D Jones; Yury S Polikanov; Bijoyita Roy; Kristin S Koutmou
Journal:  Proc Natl Acad Sci U S A       Date:  2019-10-31       Impact factor: 11.205

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Journal:  Nucleic Acids Res       Date:  2018-10-12       Impact factor: 16.971

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  20 in total

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2.  Expanding the epitranscriptome: Dihydrouridine in mRNA.

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Journal:  PLoS Biol       Date:  2022-07-20       Impact factor: 9.593

3.  Identification and mapping of post-transcriptional modifications on the HIV-1 antisense transcript Ast in human cells.

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4.  HSP90-dependent PUS7 overexpression facilitates the metastasis of colorectal cancer cells by regulating LASP1 abundance.

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Review 5.  The Regulation of RNA Modification Systems: The Next Frontier in Epitranscriptomics?

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Review 6.  A mark of disease: how mRNA modifications shape genetic and acquired pathologies.

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7.  PAMP-triggered genetic reprogramming involves widespread alternative transcription initiation and an immediate transcription factor wave.

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Review 8.  Regulation of Ribosome Function by RNA Modifications in Hematopoietic Development and Leukemia: It Is Not Only a Matter of m6A.

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Review 9.  Synthetic modified messenger RNA for therapeutic applications.

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Review 10.  Long Non-Coding RNA Epigenetics.

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