Literature DB >> 25616322

Design, synthesis, and application of OB2C combinatorial peptide and peptidomimetic libraries.

Ruiwu Liu1, Tsung-Chieh Shih, Xiaojun Deng, Lara Anwar, Sara Ahadi, Pappanaicken Kumaresan, Kit S Lam.   

Abstract

The "one-bead two-compound" (OB2C) combinatorial library is constructed on topologically segregated trifunctional bilayer beads such that each bead has a fixed cell-capturing ligand and a random library compound co-displayed on its surface and a chemical coding tag (bar code) inside the bead. An OB2C library containing thousands to millions of compounds can be synthesized and screened concurrently within a short period of time. When live cells are incubated with such OB2C libraries, every bead will be coated with a monolayer of cells. The cell membranes of the captured cells facing the bead surface are exposed to the library compounds tethered to each bead. A specific biochemical or cellular response can be detected with an appropriate reporter system. The OB2C method enables investigators to rapidly discover synthetic molecules that not only interact with cell-surface receptors but can also stimulate or inhibit downstream cell signaling. To demonstrate this powerful method, one OB2C peptide library and two OB2C peptidomimetic libraries were synthesized and screened against Molt-4 lymphoma cells to discover "death ligands." Apoptosis of the bead-bound cells was detected with immunocytochemistry using horseradish peroxidase (HRP)-conjugated anti-cleaved caspase-3 antibody and 3,3'-diaminobenzidine as a substrate. Two novel synthetic "death ligands" against Molt-4 cells were discovered using this OB2C library approach.

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Year:  2015        PMID: 25616322      PMCID: PMC4625904          DOI: 10.1007/978-1-4939-2020-4_1

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  21 in total

1.  The "One-Bead-One-Compound" Combinatorial Library Method.

Authors:  Kit S. Lam; Michal Lebl; Viktor Krchnák
Journal:  Chem Rev       Date:  1997-04-01       Impact factor: 60.622

2.  A novel peptide-based encoding system for "one-bead one-compound" peptidomimetic and small molecule combinatorial libraries.

Authors:  Ruiwu Liu; Jan Marik; Kit S Lam
Journal:  J Am Chem Soc       Date:  2002-07-03       Impact factor: 15.419

Review 3.  Applications of one-bead one-compound combinatorial libraries and chemical microarrays in signal transduction research.

Authors:  Kit S Lam; Ruiwu Liu; Suzanne Miyamoto; Alan L Lehman; Joseph M Tuscano
Journal:  Acc Chem Res       Date:  2003-06       Impact factor: 22.384

4.  A new type of synthetic peptide library for identifying ligand-binding activity.

Authors:  K S Lam; S E Salmon; E M Hersh; V J Hruby; W M Kazmierski; R J Knapp
Journal:  Nature       Date:  1991-11-07       Impact factor: 49.962

5.  General method for rapid synthesis of multicomponent peptide mixtures.

Authors:  A Furka; F Sebestyén; M Asgedom; G Dibó
Journal:  Int J Pept Protein Res       Date:  1991-06

6.  Friendly strategy to prepare encoded one bead-one compound cyclic peptide library.

Authors:  Silvana L Giudicessi; Juan M Gurevich-Messina; María C Martínez-Ceron; Rosa Erra-Balsells; Fernando Albericio; Osvaldo Cascone; Silvia A Camperi
Journal:  ACS Comb Sci       Date:  2013-09-06       Impact factor: 3.784

7.  Color test for detection of free terminal amino groups in the solid-phase synthesis of peptides.

Authors:  E Kaiser; R L Colescott; C D Bossinger; P I Cook
Journal:  Anal Biochem       Date:  1970-04       Impact factor: 3.365

8.  Combinatorial chemistry identifies high-affinity peptidomimetics against alpha4beta1 integrin for in vivo tumor imaging.

Authors:  Li Peng; Ruiwu Liu; Jan Marik; Xiaobing Wang; Yoshikazu Takada; Kit S Lam
Journal:  Nat Chem Biol       Date:  2006-06-11       Impact factor: 15.040

9.  The use of one-bead one-compound combinatorial library technology to discover high-affinity αvβ3 integrin and cancer targeting arginine-glycine-aspartic acid ligands with a built-in handle.

Authors:  Wenwu Xiao; Yan Wang; Edmond Y Lau; Juntao Luo; Nianhuan Yao; Changying Shi; Leah Meza; Harry Tseng; Yoshiko Maeda; Pappanaicken Kumaresan; Ruiwu Liu; Felice C Lightstone; Yoshikazu Takada; Kit S Lam
Journal:  Mol Cancer Ther       Date:  2010-09-21       Impact factor: 6.261

10.  A combinatorial approach to obtain affinity media with binding properties towards the aflatoxins.

Authors:  Cinzia Tozzi; Laura Anfossi; Claudio Baggiani; Cristina Giovannoli; Gianfranco Giraudi
Journal:  Anal Bioanal Chem       Date:  2003-02-22       Impact factor: 4.142

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  5 in total

1.  Solid-Phase Synthesis of β-Amino Ketones Via DNA-Compatible Organocatalytic Mannich Reactions.

Authors:  Nam Tran-Hoang; Thomas Kodadek
Journal:  ACS Comb Sci       Date:  2018-01-24       Impact factor: 3.784

Review 2.  Combinatorial chemistry in drug discovery.

Authors:  Ruiwu Liu; Xiaocen Li; Kit S Lam
Journal:  Curr Opin Chem Biol       Date:  2017-05-08       Impact factor: 8.822

3.  Screening one bead one compound libraries against serum using a flow cytometer: Determination of the minimum antibody concentration required for ligand discovery.

Authors:  Osayemwenre Erharuyi; Scott Simanski; Patrick J McEnaney; Thomas Kodadek
Journal:  Bioorg Med Chem Lett       Date:  2018-01-31       Impact factor: 2.823

Review 4.  Tumor-targeting peptides from combinatorial libraries.

Authors:  Ruiwu Liu; Xiaocen Li; Wenwu Xiao; Kit S Lam
Journal:  Adv Drug Deliv Rev       Date:  2016-05-19       Impact factor: 15.470

5.  Plagiarism in Scientific Publishing - the Issue of Patent Holder (War Between Developed and Undeveloped Countries) - Letter to Editor.

Authors:  Árpád Furka
Journal:  Acta Inform Med       Date:  2018
  5 in total

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