Literature DB >> 25615962

Zinc-substituted pseudoazurin solved by S/Zn-SAD phasing.

Renate Gessmann1, Maria Papadovasilaki1, Evangelos Drougkas2, Kyriacos Petratos1.   

Abstract

The copper(II) centre of the blue copper protein pseudoazurin from Alcaligenes faecalis has been substituted by zinc(II) via denaturing the protein, chelation and removal of copper and refolding the apoprotein, followed by the addition of an aqueous solution of ZnCl2. Vapour-diffusion experiments produced colourless hexagonal crystals (space group P65), which when cryocooled had unit-cell parameters a=b=49.01, c=98.08 Å. Diffraction data collected at 100 K using a copper sealed tube were phased by the weak anomalous signal of five S atoms and one Zn atom. The structure was fitted manually and refined to 1.6 Å resolution. The zinc-substituted protein exhibits similar overall geometry to the native structure with copper. Zn2+ binds more strongly to its four ligand atoms (His40 Nδ1, Cys78 Sγ, His81 Nδ1 and Met86 Sδ) and retains the tetrahedral arrangement, although the structure is less distorted than the native copper protein.

Entities:  

Keywords:  copper-binding protein; metalloprotein; protein unfolding and refolding; sulfur/zinc SAD; zinc substitution

Mesh:

Substances:

Year:  2015        PMID: 25615962      PMCID: PMC4304741          DOI: 10.1107/S2053230X14025552

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  24 in total

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Authors:  K Yamamoto; T Uozumi; T Beppu
Journal:  J Bacteriol       Date:  1987-12       Impact factor: 3.490

2.  Site-directed mutants of pseudoazurin: explanation of increased redox potentials from X-ray structures and from calculation of redox potential differences.

Authors:  C A Libeu; M Kukimoto; M Nishiyama; S Horinouchi; E T Adman
Journal:  Biochemistry       Date:  1997-10-28       Impact factor: 3.162

3.  Refinement of the structure of pseudoazurin from Alcaligenes faecalis S-6 at 1.55 A resolution.

Authors:  K Petratos; Z Dauter; K S Wilson
Journal:  Acta Crystallogr B       Date:  1988-12-01

4.  Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.

Authors:  T Inoue; N Nishio; S Suzuki; K Kataoka; T Kohzuma; Y Kai
Journal:  J Biol Chem       Date:  1999-06-18       Impact factor: 5.157

5.  Metal-ligand interactions in perturbed blue copper sites: a paramagnetic (1)H NMR study of Co(II)-pseudoazurin.

Authors:  Claudio O Fernández; Tomotake Niizeki; Takamitsu Kohzuma; Alejandro J Vila
Journal:  J Biol Inorg Chem       Date:  2002-08-29       Impact factor: 3.358

6.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

7.  Features and development of Coot.

Authors:  P Emsley; B Lohkamp; W G Scott; K Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  A caged lanthanide complex as a paramagnetic shift agent for protein NMR.

Authors:  Miguel Prudêncio; Jan Rohovec; Joop A Peters; Elitza Tocheva; Martin J Boulanger; Michael E P Murphy; Hermen-Jan Hupkes; Walter Kosters; Antonietta Impagliazzo; Marcellus Ubbink
Journal:  Chemistry       Date:  2004-07-05       Impact factor: 5.236

9.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

10.  Influence of loop shortening on the metal binding site of cupredoxin pseudoazurin.

Authors:  Milko Velarde; Robert Huber; Sachiko Yanagisawa; Christopher Dennison; Albrecht Messerschmidt
Journal:  Biochemistry       Date:  2007-08-09       Impact factor: 3.162

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