Literature DB >> 10364229

Crystal structure determinations of oxidized and reduced pseudoazurins from Achromobacter cycloclastes. Concerted movement of copper site in redox forms with the rearrangement of hydrogen bond at a remote histidine.

T Inoue1, N Nishio, S Suzuki, K Kataoka, T Kohzuma, Y Kai.   

Abstract

The crystal structures of oxidized and reduced pseudoazurins from a denitrifying bacterium, Achromobacter cycloclastes IAM1013, have been determined at 1.35- and 1.6-A resolutions, respectively. The copper site in the oxidized state exhibits a distorted tetrahedral structure like those of other pseudoazurins. However, not only a small change of the copper geometry, but concerted peptide bond flips are identified. The imidazole ring of remote His6 has a hydrogen bonding distance of 2.73 A between N-delta1(His6) and O-gamma1(Thr36) in the oxidized protein. When the protein is reduced at pH 6.0, the imidazole ring rotates by 30.3 degrees and moves 1.00 A away from the position of the oxidized state. A new hydrogen bond between N-epsilon2(His6) and O-epsilon1(Glu4) is formed with a distance of 3.03 A, while the hydrogen bond between N-delta1(His6)-O-gamma1(Thr36) is maintained with an interatomic distance of 2.81 A. A concomitant peptide bond flip of main chain between Ile34 and Thr36 occurs.

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Year:  1999        PMID: 10364229     DOI: 10.1074/jbc.274.25.17845

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  13 in total

1.  The structure and dynamics in solution of Cu(I) pseudoazurin from Paracoccus pantotrophus.

Authors:  G S Thompson; Y C Leung; S J Ferguson; S E Radford; C Redfield
Journal:  Protein Sci       Date:  2000-05       Impact factor: 6.725

2.  The 1.4 A resolution structure of Paracoccus pantotrophus pseudoazurin.

Authors:  Shabir Najmudin; Sofia R Pauleta; Isabel Moura; Maria J Romão
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-25

3.  Stabilization of protein structure through π-π interaction in the second coordination sphere of pseudoazurin.

Authors:  Takahide Yamaguchi; Yuko Nihei; Duncan E K Sutherland; Martin J Stillman; Takamitsu Kohzuma
Journal:  Protein Sci       Date:  2017-07-20       Impact factor: 6.725

4.  The electron transfer complex between nitrous oxide reductase and its electron donors.

Authors:  Simone Dell'acqua; Isabel Moura; José J G Moura; Sofia R Pauleta
Journal:  J Biol Inorg Chem       Date:  2011-07-08       Impact factor: 3.358

5.  Periplasmic Nicotine Dehydrogenase NdhAB Utilizes Pseudoazurin as Its Physiological Electron Acceptor in Agrobacterium tumefaciens S33.

Authors:  Wenjun Yu; Rongshui Wang; Haiyan Huang; Huijun Xie; Shuning Wang
Journal:  Appl Environ Microbiol       Date:  2017-08-17       Impact factor: 4.792

6.  Relaxation of structural constraints during Amicyanin unfolding.

Authors:  John J Kozak; Harry B Gray; Roberto A Garza-López
Journal:  J Inorg Biochem       Date:  2017-11-22       Impact factor: 4.155

7.  Pi-pi interaction between aromatic ring and copper-coordinated His81 imidazole regulates the blue copper active-site structure.

Authors:  Rehab F Abdelhamid; Yuji Obara; Yoshiko Uchida; Takamitsu Kohzuma; David M Dooley; Doreen E Brown; Hiroshi Hori
Journal:  J Biol Inorg Chem       Date:  2006-10-10       Impact factor: 3.358

8.  The Rise of Radicals in Bioinorganic Chemistry.

Authors:  Harry B Gray; Jay R Winkler
Journal:  Isr J Chem       Date:  2016-07-29       Impact factor: 3.333

9.  NMR hyperfine shifts in blue copper proteins: a quantum chemical investigation.

Authors:  Yong Zhang; Eric Oldfield
Journal:  J Am Chem Soc       Date:  2008-03-04       Impact factor: 15.419

10.  Pseudoazurin from Sinorhizobium meliloti as an electron donor to copper-containing nitrite reductase: influence of the redox partner on the reduction potentials of the enzyme copper centers.

Authors:  Félix M Ferroni; Jacopo Marangon; Nicolás I Neuman; Julio C Cristaldi; Silvina M Brambilla; Sergio A Guerrero; María G Rivas; Alberto C Rizzi; Carlos D Brondino
Journal:  J Biol Inorg Chem       Date:  2014-03-20       Impact factor: 3.358

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