Literature DB >> 25600138

Sharper graph-theoretical conditions for the stabilization of complex reaction networks.

Daniel Knight1, Guy Shinar2, Martin Feinberg3.   

Abstract

Across the landscape of all possible chemical reaction networks there is a surprising degree of stable behavior, despite what might be substantial complexity and nonlinearity in the governing differential equations. At the same time there are reaction networks, in particular those that arise in biology, for which richer behavior is exhibited. Thus, it is of interest to understand network-structural features whose presence enforces dull, stable behavior and whose absence permits the dynamical richness that might be necessary for life. We present conditions on a network's Species-Reaction Graph that ensure a high degree of stable behavior, so long as the kinetic rate functions satisfy certain weak and natural constraints. These graph-theoretical conditions are considerably more incisive than those reported earlier.
Copyright © 2015 Elsevier Inc. All rights reserved.

Entities:  

Keywords:  Bistability; Concordant; Multistability; Reaction network; Species-Reaction Graph; Systems biology

Mesh:

Year:  2015        PMID: 25600138      PMCID: PMC4675137          DOI: 10.1016/j.mbs.2015.01.002

Source DB:  PubMed          Journal:  Math Biosci        ISSN: 0025-5564            Impact factor:   2.144


  5 in total

1.  Graph-theoretic criteria for injectivity and unique equilibria in general chemical reaction systems.

Authors:  Murad Banaji; Gheorghe Craciun
Journal:  Adv Appl Math       Date:  2010-02-01       Impact factor: 0.848

2.  Understanding bistability in complex enzyme-driven reaction networks.

Authors:  Gheorghe Craciun; Yangzhong Tang; Martin Feinberg
Journal:  Proc Natl Acad Sci U S A       Date:  2006-05-30       Impact factor: 11.205

3.  CoNtRol: an open source framework for the analysis of chemical reaction networks.

Authors:  Pete Donnell; Murad Banaji; Anca Marginean; Casian Pantea
Journal:  Bioinformatics       Date:  2014-01-30       Impact factor: 6.937

4.  Concordant chemical reaction networks.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Math Biosci       Date:  2012-05-30       Impact factor: 2.144

5.  Concordant chemical reaction networks and the Species-Reaction Graph.

Authors:  Guy Shinar; Martin Feinberg
Journal:  Math Biosci       Date:  2012-08-21       Impact factor: 2.144

  5 in total

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