Literature DB >> 24489373

CoNtRol: an open source framework for the analysis of chemical reaction networks.

Pete Donnell1, Murad Banaji1, Anca Marginean1, Casian Pantea1.   

Abstract

UNLABELLED: We introduce CoNtRol, a web-based framework for analysis of chemical reaction networks (CRNs). It is designed to be both extensible and simple to use, complementing existing CRN-related tools. CoNtRol currently implements a number of necessary and/or sufficient structural tests for multiple equilibria, stable periodic orbits, convergence to equilibria and persistence, with the potential for incorporation of further tests.
AVAILABILITY AND IMPLEMENTATION: Reference implementation: reaction-networks.net/control/. Source code and binaries, released under the GPLv3: reaction-networks.net/control/download/. Documentation: reaction-networks.net/wiki/CoNtRol.
© The Author 2014. Published by Oxford University Press. All rights reserved. For Permissions, please e-mail: journals.permissions@oup.com.

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Year:  2014        PMID: 24489373     DOI: 10.1093/bioinformatics/btu063

Source DB:  PubMed          Journal:  Bioinformatics        ISSN: 1367-4803            Impact factor:   6.937


  9 in total

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7.  Dynamic modelling of the mTOR signalling network reveals complex emergent behaviours conferred by DEPTOR.

Authors:  Thawfeek M Varusai; Lan K Nguyen
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8.  Identifying parameter regions for multistationarity.

Authors:  Carsten Conradi; Elisenda Feliu; Maya Mincheva; Carsten Wiuf
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9.  A computational framework for a Lyapunov-enabled analysis of biochemical reaction networks.

Authors:  M Ali Al-Radhawi; David Angeli; Eduardo D Sontag
Journal:  PLoS Comput Biol       Date:  2020-02-24       Impact factor: 4.475

  9 in total

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