Literature DB >> 16735474

Understanding bistability in complex enzyme-driven reaction networks.

Gheorghe Craciun1, Yangzhong Tang, Martin Feinberg.   

Abstract

Much attention has been paid recently to bistability and switch-like behavior that might be resident in important biochemical reaction networks. There is, in fact, a great deal of subtlety in the relationship between the structure of a reaction network and its capacity to engender bistability. In common physicochemical settings, large classes of extremely complex networks, taken with mass action kinetics, cannot give rise to bistability no matter what values the rate constants take. On the other hand, bistable behavior can be induced in those same settings by certain very simple and classical mass action mechanisms for enzyme catalysis of a single overall reaction. We present a theorem that distinguishes between those mass action networks that might support bistable behavior and those that cannot. Moreover, we indicate how switch-like behavior results from a well-studied mechanism for the action of human dihydrofolate reductase, an important anti-cancer target.

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Year:  2006        PMID: 16735474      PMCID: PMC1592242          DOI: 10.1073/pnas.0602767103

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  13 in total

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Review 4.  Dominoes and clocks: the union of two views of the cell cycle.

Authors:  A W Murray; M W Kirschner
Journal:  Science       Date:  1989-11-03       Impact factor: 47.728

5.  Kinetic analysis of a molecular model of the budding yeast cell cycle.

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6.  Multiple equilibria in complex chemical reaction networks: extensions to entrapped species models.

Authors:  G Craciun; M Feinberg
Journal:  Syst Biol (Stevenage)       Date:  2006-07

7.  A mechanism for memory storage insensitive to molecular turnover: a bistable autophosphorylating kinase.

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Journal:  Proc Natl Acad Sci U S A       Date:  1985-05       Impact factor: 11.205

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Authors:  Andrew R Reynolds; Christian Tischer; Peter J Verveer; Oliver Rocks; Philippe I H Bastiaens
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9.  Signaling switches and bistability arising from multisite phosphorylation in protein kinase cascades.

Authors:  Nick I Markevich; Jan B Hoek; Boris N Kholodenko
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10.  Unusual transient- and steady-state kinetic behavior is predicted by the kinetic scheme operational for recombinant human dihydrofolate reductase.

Authors:  J R Appleman; W A Beard; T J Delcamp; N J Prendergast; J H Freisheim; R L Blakley
Journal:  J Biol Chem       Date:  1990-02-15       Impact factor: 5.157

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  69 in total

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3.  Subnetwork analysis reveals dynamic features of complex (bio)chemical networks.

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4.  Graph-theoretic methods for the analysis of chemical and biochemical networks. I. Multistability and oscillations in ordinary differential equation models.

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6.  Bistability and oscillations in chemical reaction networks.

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Review 8.  Models of signalling networks - what cell biologists can gain from them and give to them.

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10.  Sensitivity and robustness in covalent modification cycles with a bifunctional converter enzyme.

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