Literature DB >> 25585921

Geographical barriers and climate influence demographic history in narrowleaf cottonwoods.

L M Evans1, G J Allan1, S P DiFazio2, G T Slavov3, J A Wilder1, K D Floate4, S B Rood5, T G Whitham1.   

Abstract

Studies of genetic variation can clarify the role of geography and spatio-temporal variation of climate in shaping demography, particularly in temperate zone tree species with large latitudinal ranges. Here, we examined genetic variation in narrowleaf cottonwood, Populus angustifolia, a dominant riparian tree. Using multi-locus surveys of polymorphism in 363 individuals across the species' 1800 km latitudinal range, we found that, first, P. angustifolia has stronger neutral genetic structure than many forest trees (simple sequence repeat (SSR) FST=0.21), with major genetic groups corresponding to large apparent geographical barriers to gene flow. Second, using SSRs and putatively neutral sequenced loci, coalescent simulations indicated that populations diverged before the last glacial maximum (LGM), suggesting the presence of population structure before the LGM. Third, the LGM and subsequent warming appear to have had different influences on each of these distinct populations, with effective population size reduction in the southern extent of the range but major expansion in the north. These results are consistent with the hypothesis that climate and geographic barriers have jointly affected the demographic history of P. angustifolia, and point the importance of both factors as being instrumental in shaping genetic variation and structure in widespread forest trees.

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Year:  2015        PMID: 25585921      PMCID: PMC4359977          DOI: 10.1038/hdy.2014.115

Source DB:  PubMed          Journal:  Heredity (Edinb)        ISSN: 0018-067X            Impact factor:   3.821


  35 in total

1.  Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies.

Authors:  Daniel Falush; Matthew Stephens; Jonathan K Pritchard
Journal:  Genetics       Date:  2003-08       Impact factor: 4.562

2.  The HKA test revisited: a maximum-likelihood-ratio test of the standard neutral model.

Authors:  Stephen I Wright; Brian Charlesworth
Journal:  Genetics       Date:  2004-10       Impact factor: 4.562

3.  Comparison of Bayesian and maximum-likelihood inference of population genetic parameters.

Authors:  Peter Beerli
Journal:  Bioinformatics       Date:  2005-11-29       Impact factor: 6.937

4.  CLUMPP: a cluster matching and permutation program for dealing with label switching and multimodality in analysis of population structure.

Authors:  Mattias Jakobsson; Noah A Rosenberg
Journal:  Bioinformatics       Date:  2007-05-07       Impact factor: 6.937

5.  Isolation with migration models for more than two populations.

Authors:  Jody Hey
Journal:  Mol Biol Evol       Date:  2009-12-02       Impact factor: 16.240

6.  Genetic differentiation, clinal variation and phenotypic associations with growth cessation across the Populus tremula photoperiodic pathway.

Authors:  Xiao-Fei Ma; David Hall; Katherine R St Onge; Stefan Jansson; Pär K Ingvarsson
Journal:  Genetics       Date:  2010-08-30       Impact factor: 4.562

7.  Adaptive protein evolution at the Adh locus in Drosophila.

Authors:  J H McDonald; M Kreitman
Journal:  Nature       Date:  1991-06-20       Impact factor: 49.962

8.  Genome resequencing reveals multiscale geographic structure and extensive linkage disequilibrium in the forest tree Populus trichocarpa.

Authors:  Gancho T Slavov; Stephen P DiFazio; Joel Martin; Wendy Schackwitz; Wellington Muchero; Eli Rodgers-Melnick; Mindie F Lipphardt; Christa P Pennacchio; Uffe Hellsten; Len A Pennacchio; Lee E Gunter; Priya Ranjan; Kelly Vining; Kyle R Pomraning; Larry J Wilhelm; Matteo Pellegrini; Todd C Mockler; Michael Freitag; Armando Geraldes; Yousry A El-Kassaby; Shawn D Mansfield; Quentin C B Cronk; Carl J Douglas; Steven H Strauss; Dan Rokhsar; Gerald A Tuskan
Journal:  New Phytol       Date:  2012-08-03       Impact factor: 10.151

9.  Multilocus patterns of nucleotide polymorphism and the demographic history of Populus tremula.

Authors:  Pär K Ingvarsson
Journal:  Genetics       Date:  2008-08-20       Impact factor: 4.562

Review 10.  Potential for evolutionary responses to climate change - evidence from tree populations.

Authors:  Florian J Alberto; Sally N Aitken; Ricardo Alía; Santiago C González-Martínez; Heikki Hänninen; Antoine Kremer; François Lefèvre; Thomas Lenormand; Sam Yeaman; Ross Whetten; Outi Savolainen
Journal:  Glob Chang Biol       Date:  2013-04-03       Impact factor: 10.863

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  5 in total

1.  Recent demographic histories of temperate deciduous trees inferred from microsatellite markers.

Authors:  Yu Cao; Da-Yong Zhang; Yan-Fei Zeng; Wei-Ning Bai
Journal:  BMC Ecol Evol       Date:  2021-05-18

2.  Mitochondrial phylogeny within the Yellow Chat (Epthianura crocea) does not support subspecific designation of endangered Alligator Rivers population.

Authors:  Robin Leppitt; Alea Rose; Wayne A Houston; Peter M Kyne; Sam C Banks; John C Z Woinarski; Stephen T Garnett
Journal:  Ecol Evol       Date:  2022-07-24       Impact factor: 3.167

3.  Aggregate population-level models informed by genetics predict more suitable habitat than traditional species-level model across the range of a widespread riparian tree.

Authors:  Shannon L J Bayliss; Monica Papeş; Jennifer A Schweitzer; Joseph K Bailey
Journal:  PLoS One       Date:  2022-09-19       Impact factor: 3.752

4.  Bud phenology and growth are subject to divergent selection across a latitudinal gradient in Populus angustifolia and impact adaptation across the distributional range and associated arthropods.

Authors:  Luke M Evans; Sobadini Kaluthota; David W Pearce; Gerard J Allan; Kevin Floate; Stewart B Rood; Thomas G Whitham
Journal:  Ecol Evol       Date:  2016-06-10       Impact factor: 2.912

5.  Going with the flow: Intraspecific variation may act as a natural ally to counterbalance the impacts of global change for the riparian species Populus deltoides.

Authors:  Julie Godbout; Marie-Claude Gros-Louis; Manuel Lamothe; Nathalie Isabel
Journal:  Evol Appl       Date:  2019-09-20       Impact factor: 5.183

  5 in total

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