Literature DB >> 25575305

The physiology and ecological implications of efficient growth.

Benjamin R K Roller1, Thomas M Schmidt2.   

Abstract

The natural habitats of microbes are typically spatially structured with limited resources, so opportunities for unconstrained, balanced growth are rare. In these habitats, selection should favor microbes that are able to use resources most efficiently, that is, microbes that produce the most progeny per unit of resource consumed. On the basis of this assertion, we propose that selection for efficiency is a primary driver of the composition of microbial communities. In this article, we review how the quality and quantity of resources influence the efficiency of heterotrophic growth. A conceptual model proposing innate differences in growth efficiency between oligotrophic and copiotrophic microbes is also provided. We conclude that elucidation of the mechanisms underlying efficient growth will enhance our understanding of the selective pressures shaping microbes and will improve our capacity to manage microbial communities effectively.

Mesh:

Year:  2015        PMID: 25575305      PMCID: PMC4478692          DOI: 10.1038/ismej.2014.235

Source DB:  PubMed          Journal:  ISME J        ISSN: 1751-7362            Impact factor:   10.302


  27 in total

1.  Oligotrophs versus copiotrophs.

Authors:  A L Koch
Journal:  Bioessays       Date:  2001-07       Impact factor: 4.345

2.  Dependency on medium and temperature of cell size and chemical composition during balanced grown of Salmonella typhimurium.

Authors:  M SCHAECHTER; O MAALOE; N O KJELDGAARD
Journal:  J Gen Microbiol       Date:  1958-12

Review 3.  Microorganisms and climate change: terrestrial feedbacks and mitigation options.

Authors:  Brajesh K Singh; Richard D Bardgett; Pete Smith; Dave S Reay
Journal:  Nat Rev Microbiol       Date:  2010-11       Impact factor: 60.633

4.  Toward an ecological classification of soil bacteria.

Authors:  Noah Fierer; Mark A Bradford; Robert B Jackson
Journal:  Ecology       Date:  2007-06       Impact factor: 5.499

Review 5.  Marine microbes see a sea of gradients.

Authors:  Roman Stocker
Journal:  Science       Date:  2012-11-02       Impact factor: 47.728

6.  Abundant SAR11 viruses in the ocean.

Authors:  Yanlin Zhao; Ben Temperton; J Cameron Thrash; Michael S Schwalbach; Kevin L Vergin; Zachary C Landry; Mark Ellisman; Tom Deerinck; Matthew B Sullivan; Stephen J Giovannoni
Journal:  Nature       Date:  2013-02-13       Impact factor: 49.962

Review 7.  Implications of streamlining theory for microbial ecology.

Authors:  Stephen J Giovannoni; J Cameron Thrash; Ben Temperton
Journal:  ISME J       Date:  2014-04-17       Impact factor: 10.302

Review 8.  Microbial maintenance: a critical review on its quantification.

Authors:  Peter van Bodegom
Journal:  Microb Ecol       Date:  2007-03-01       Impact factor: 4.552

9.  The regulation of carbohydrate metabolism in Klebsiella aerogenes NCTC 418 organisms, growing in chemostat culture.

Authors:  O M Neijssel; D W Tempest
Journal:  Arch Microbiol       Date:  1975-12-31       Impact factor: 2.552

10.  The Black Queen Hypothesis: evolution of dependencies through adaptive gene loss.

Authors:  J Jeffrey Morris; Richard E Lenski; Erik R Zinser
Journal:  MBio       Date:  2012-05-02       Impact factor: 7.867

View more
  21 in total

1.  Heterotrophic bacteria from an extremely phosphate-poor lake have conditionally reduced phosphorus demand and utilize diverse sources of phosphorus.

Authors:  Mengyin Yao; Felix J Elling; CarriAyne Jones; Sulung Nomosatryo; Christopher P Long; Sean A Crowe; Maciek R Antoniewicz; Kai-Uwe Hinrichs; Julia A Maresca
Journal:  Environ Microbiol       Date:  2015-12-02       Impact factor: 5.491

2.  Multisubstrate DNA stable isotope probing reveals guild structure of bacteria that mediate soil carbon cycling.

Authors:  Samuel E Barnett; Nicholas D Youngblut; Chantal N Koechli; Daniel H Buckley
Journal:  Proc Natl Acad Sci U S A       Date:  2021-11-23       Impact factor: 11.205

3.  Translation Comes First: Ancient and Convergent Selection of Codon Usage Bias Across Prokaryotic Genomes.

Authors:  Francisco González-Serrano; Cei Abreu-Goodger; Luis Delaye
Journal:  J Mol Evol       Date:  2022-09-26       Impact factor: 3.973

4.  An alternative resource allocation strategy in the chemolithoautotrophic archaeon Methanococcus maripaludis.

Authors:  Albert L Müller; Wenyu Gu; Vadim Patsalo; Jörg S Deutzmann; James R Williamson; Alfred M Spormann
Journal:  Proc Natl Acad Sci U S A       Date:  2021-04-20       Impact factor: 11.205

5.  Opportunistic bacteria with reduced genomes are effective competitors for organic nitrogen compounds in coastal dinoflagellate blooms.

Authors:  Yu Han; Nianzhi Jiao; Yao Zhang; Fan Zhang; Chen He; Xuejiao Liang; Ruanhong Cai; Quan Shi; Kai Tang
Journal:  Microbiome       Date:  2021-03-24       Impact factor: 14.650

6.  Resource-dependent attenuation of species interactions during bacterial succession.

Authors:  Damian W Rivett; Thomas Scheuerl; Christopher T Culbert; Shorok B Mombrikotb; Emma Johnstone; Timothy G Barraclough; Thomas Bell
Journal:  ISME J       Date:  2016-02-19       Impact factor: 10.302

7.  Direct evidence for microbial-derived soil organic matter formation and its ecophysiological controls.

Authors:  Cynthia M Kallenbach; Serita D Frey; A Stuart Grandy
Journal:  Nat Commun       Date:  2016-11-28       Impact factor: 14.919

8.  Resource Legacies of Organic and Conventional Management Differentiate Soil Microbial Carbon Use.

Authors:  Melissa M Arcand; David J Levy-Booth; Bobbi L Helgason
Journal:  Front Microbiol       Date:  2017-11-27       Impact factor: 5.640

9.  Exploiting rRNA operon copy number to investigate bacterial reproductive strategies.

Authors:  Benjamin R K Roller; Steven F Stoddard; Thomas M Schmidt
Journal:  Nat Microbiol       Date:  2016-09-12       Impact factor: 17.745

10.  Microbial communities with distinct denitrification potential in spruce and beech soils differing in nitrate leaching.

Authors:  Jiří Bárta; Karolina Tahovská; Hana Šantrůčková; Filip Oulehle
Journal:  Sci Rep       Date:  2017-08-29       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.