Literature DB >> 25574639

DREAMing of benchmarks.

Irene Jarchum, Susan Jones.   

Abstract

Mesh：

Year:  2015        PMID： 25574639     DOI： 10.1038/nbt.3115

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN： 1087-0156            Impact factor:   54.908


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  7 in total

1.  Crowdsourced analysis of clinical trial data to predict amyotrophic lateral sclerosis progression.

Authors:  Robert Küffner; Neta Zach; Raquel Norel; Johann Hawe; David Schoenfeld; Liuxia Wang; Guang Li; Lilly Fang; Lester Mackey; Orla Hardiman; Merit Cudkowicz; Alexander Sherman; Gokhan Ertaylan; Moritz Grosse-Wentrup; Torsten Hothorn; Jules van Ligtenberg; Jakob H Macke; Timm Meyer; Bernhard Schölkopf; Linh Tran; Rubio Vaughan; Gustavo Stolovitzky; Melanie L Leitner
Journal:  Nat Biotechnol       Date:  2014-11-02       Impact factor: 54.908

2.  Global optimization of somatic variant identification in cancer genomes with a global community challenge.

Authors:  Paul C Boutros; Adam A Margolin; Joshua M Stuart; Adam D Ewing; Kyle Ellrott; Thea C Norman; Kristen K Dang; Yin Hu; Michael R Kellen; Christine Suver; J Christopher Bare; Lincoln D Stein; Paul T Spellman; Gustavo Stolovitzky; Stephen H Friend
Journal:  Nat Genet       Date:  2014-04       Impact factor: 38.330

3.  A community computational challenge to predict the activity of pairs of compounds.

Authors:  Mukesh Bansal; Jichen Yang; Charles Karan; Michael P Menden; James C Costello; Hao Tang; Guanghua Xiao; Yajuan Li; Jeffrey Allen; Rui Zhong; Beibei Chen; Minsoo Kim; Tao Wang; Laura M Heiser; Ronald Realubit; Michela Mattioli; Mariano J Alvarez; Yao Shen; Daniel Gallahan; Dinah Singer; Julio Saez-Rodriguez; Yang Xie; Gustavo Stolovitzky; Andrea Califano
Journal:  Nat Biotechnol       Date:  2014-11-17       Impact factor: 54.908

4.  Systematic analysis of challenge-driven improvements in molecular prognostic models for breast cancer.

Authors:  Adam A Margolin; Erhan Bilal; Erich Huang; Thea C Norman; Lars Ottestad; Brigham H Mecham; Ben Sauerwine; Michael R Kellen; Lara M Mangravite; Matthew D Furia; Hans Kristian Moen Vollan; Oscar M Rueda; Justin Guinney; Nicole A Deflaux; Bruce Hoff; Xavier Schildwachter; Hege G Russnes; Daehoon Park; Veronica O Vang; Tyler Pirtle; Lamia Youseff; Craig Citro; Christina Curtis; Vessela N Kristensen; Joseph Hellerstein; Stephen H Friend; Gustavo Stolovitzky; Samuel Aparicio; Carlos Caldas; Anne-Lise Børresen-Dale
Journal:  Sci Transl Med       Date:  2013-04-17       Impact factor: 17.956

5.  A community effort to assess and improve drug sensitivity prediction algorithms.

Authors:  James C Costello; Laura M Heiser; Elisabeth Georgii; Mehmet Gönen; Michael P Menden; Nicholas J Wang; Mukesh Bansal; Muhammad Ammad-ud-din; Petteri Hintsanen; Suleiman A Khan; John-Patrick Mpindi; Olli Kallioniemi; Antti Honkela; Tero Aittokallio; Krister Wennerberg; James J Collins; Dan Gallahan; Dinah Singer; Julio Saez-Rodriguez; Samuel Kaski; Joe W Gray; Gustavo Stolovitzky
Journal:  Nat Biotechnol       Date:  2014-06-01       Impact factor: 54.908

6.  Improving breast cancer survival analysis through competition-based multidimensional modeling.

Authors:  Erhan Bilal; Janusz Dutkowski; Justin Guinney; In Sock Jang; Benjamin A Logsdon; Gaurav Pandey; Benjamin A Sauerwine; Yishai Shimoni; Hans Kristian Moen Vollan; Brigham H Mecham; Oscar M Rueda; Jorg Tost; Christina Curtis; Mariano J Alvarez; Vessela N Kristensen; Samuel Aparicio; Anne-Lise Børresen-Dale; Carlos Caldas; Andrea Califano; Stephen H Friend; Trey Ideker; Eric E Schadt; Gustavo A Stolovitzky; Adam A Margolin
Journal:  PLoS Comput Biol       Date:  2013-05-09       Impact factor: 4.475

7.  Crowdsourcing genetic prediction of clinical utility in the Rheumatoid Arthritis Responder Challenge.

Authors:  Robert M Plenge; Jeffrey D Greenberg; Lara M Mangravite; Jonathan M J Derry; Eli A Stahl; Marieke J H Coenen; Anne Barton; Leonid Padyukov; Lars Klareskog; Peter K Gregersen; Xavier Mariette; Larry W Moreland; S Louis Bridges; Niek de Vries; Tom W J Huizinga; Henk-Jan Guchelaar; Stephen H Friend; Gustavo Stolovitzky
Journal:  Nat Genet       Date:  2013-05       Impact factor: 38.330
  7 in total
  4 in total

Review 1.  Building the foundation for genomics in precision medicine.

Authors:  Samuel J Aronson; Heidi L Rehm
Journal:  Nature       Date:  2015-10-15       Impact factor: 49.962

2.  The Prostate Cancer DREAM Challenge: A Community-Wide Effort to Use Open Clinical Trial Data for the Quantitative Prediction of Outcomes in Metastatic Prostate Cancer.

Authors:  Kald Abdallah; Charles Hugh-Jones; Thea Norman; Stephen Friend; Gustavo Stolovitzky
Journal:  Oncologist       Date:  2015-03-16

Review 3.  Prediction of Genetic Interactions Using Machine Learning and Network Properties.

Authors:  Neel S Madhukar; Olivier Elemento; Gaurav Pandey
Journal:  Front Bioeng Biotechnol       Date:  2015-10-26

4.  The ability to classify patients based on gene-expression data varies by algorithm and performance metric.

Authors:  Stephen R Piccolo; Avery Mecham; Nathan P Golightly; Jérémie L Johnson; Dustin B Miller
Journal:  PLoS Comput Biol       Date:  2022-03-11       Impact factor: 4.475
  4 in total

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