Literature DB >> 25563563

Understanding the dynamics of rings in the melt in terms of the annealed tree model.

Jan Smrek1, Alexander Y Grosberg.   

Abstract

The dynamical properties of a long polymer ring in a melt of unknotted and unconcatenated rings are calculated. We re-examine and generalize the well known model of a ring confined to a lattice of topological obstacles in light of the recently developed Flory theory of untangled rings which maps every ring on an annealed branched polymer and establishes that the backbone associated with each ring follows self-avoiding rather than Gaussian random walk statistics. We find the scaling of the ring relaxation time and diffusion coefficient with ring length, as well as the time dependence of stress relaxation modulus, zero shear viscosity and the mean square averaged displacements of both individual monomers and the ring's mass centre. Our results agree within error bars with all available experimental and simulation data of the ring melt, although the quality of the data so far is insufficient to make a definitive judgement for or against the annealed tree theory. At the end we review briefly the relation between our findings and experimental data on chromatin dynamics.

Entities:  

Year:  2015        PMID: 25563563     DOI: 10.1088/0953-8984/27/6/064117

Source DB:  PubMed          Journal:  J Phys Condens Matter        ISSN: 0953-8984            Impact factor:   2.333


  8 in total

1.  Self-Similar Conformations and Dynamics in Entangled Melts and Solutions of Nonconcatenated Ring Polymers.

Authors:  Ting Ge; Sergey Panyukov; Michael Rubinstein
Journal:  Macromolecules       Date:  2016       Impact factor: 5.985

2.  Flory theory of randomly branched polymers.

Authors:  Ralf Everaers; Alexander Y Grosberg; Michael Rubinstein; Angelo Rosa
Journal:  Soft Matter       Date:  2017-02-08       Impact factor: 3.679

3.  A topologically driven glass in ring polymers.

Authors:  Davide Michieletto; Matthew S Turner
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-26       Impact factor: 11.205

4.  Nanoparticle Motion in Entangled Melts of Linear and Nonconcatenated Ring Polymers.

Authors:  Ting Ge; Jagannathan T Kalathi; Jonathan D Halverson; Gary S Grest; Michael Rubinstein
Journal:  Macromolecules       Date:  2017-02-13       Impact factor: 5.985

5.  Threading of Unconcatenated Ring Polymers at High Concentrations: Double-Folded vs Time-Equilibrated Structures.

Authors:  Jan Smrek; Kurt Kremer; Angelo Rosa
Journal:  ACS Macro Lett       Date:  2019-01-22       Impact factor: 6.903

6.  Effects of Topological Constraints on Penetration Structures of Semi-Flexible Ring Polymers.

Authors:  Fuchen Guo; Ke Li; Jiaxin Wu; Linli He; Linxi Zhang
Journal:  Polymers (Basel)       Date:  2020-11-11       Impact factor: 4.329

7.  Random Knotting in Fractal Ring Polymers.

Authors:  Phillip M Rauscher; Juan J de Pablo
Journal:  Macromolecules       Date:  2022-09-08       Impact factor: 6.057

8.  LassoProt: server to analyze biopolymers with lassos.

Authors:  Pawel Dabrowski-Tumanski; Wanda Niemyska; Pawel Pasznik; Joanna I Sulkowska
Journal:  Nucleic Acids Res       Date:  2016-04-29       Impact factor: 16.971

  8 in total

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