Literature DB >> 25561718

Enhancer RNAs: a class of long noncoding RNAs synthesized at enhancers.

Tae-Kyung Kim1, Martin Hemberg2, Jesse M Gray3.   

Abstract

Recent studies have revealed that active enhancers are transcribed, producing a class of noncoding RNAs called enhancer RNAs (eRNAs). eRNAs are distinct from long noncoding RNAs (lncRNAs), but these two species of noncoding RNAs may share a similar role in the activation of mRNA transcription. Emerging studies, showing that eRNAs function in controlling mRNA transcription, challenge the idea that enhancers are merely sites of transcription factor assembly. Instead, communication between promoters and enhancers can be bidirectional with promoters required to activate enhancer transcription. Reciprocally, eRNAs may then facilitate enhancer-promoter interaction or activate promoter-driven transcription.
Copyright © 2015 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2015        PMID: 25561718      PMCID: PMC4292161          DOI: 10.1101/cshperspect.a018622

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  5 in total

1.  eRNAs are required for p53-dependent enhancer activity and gene transcription.

Authors:  Carlos A Melo; Jarno Drost; Patrick J Wijchers; Harmen van de Werken; Elzo de Wit; Joachim A F Oude Vrielink; Ran Elkon; Sónia A Melo; Nicolas Léveillé; Raghu Kalluri; Wouter de Laat; Reuven Agami
Journal:  Mol Cell       Date:  2012-12-27       Impact factor: 17.970

2.  Widespread transcription at neuronal activity-regulated enhancers.

Authors:  Tae-Kyung Kim; Martin Hemberg; Jesse M Gray; Allen M Costa; Daniel M Bear; Jing Wu; David A Harmin; Mike Laptewicz; Kellie Barbara-Haley; Scott Kuersten; Eirene Markenscoff-Papadimitriou; Dietmar Kuhl; Haruhiko Bito; Paul F Worley; Gabriel Kreiman; Michael E Greenberg
Journal:  Nature       Date:  2010-04-14       Impact factor: 49.962

3.  Activating RNAs associate with Mediator to enhance chromatin architecture and transcription.

Authors:  Fan Lai; Ulf A Orom; Matteo Cesaroni; Malte Beringer; Dylan J Taatjes; Gerd A Blobel; Ramin Shiekhattar
Journal:  Nature       Date:  2013-02-17       Impact factor: 49.962

4.  Functional roles of enhancer RNAs for oestrogen-dependent transcriptional activation.

Authors:  Wenbo Li; Dimple Notani; Qi Ma; Bogdan Tanasa; Esperanza Nunez; Aaron Yun Chen; Daria Merkurjev; Jie Zhang; Kenneth Ohgi; Xiaoyuan Song; Soohwan Oh; Hong-Sook Kim; Christopher K Glass; Michael G Rosenfeld
Journal:  Nature       Date:  2013-06-02       Impact factor: 49.962

5.  Rev-Erbs repress macrophage gene expression by inhibiting enhancer-directed transcription.

Authors:  Michael T Y Lam; Han Cho; Hanna P Lesch; David Gosselin; Sven Heinz; Yumiko Tanaka-Oishi; Christopher Benner; Minna U Kaikkonen; Aneeza S Kim; Mika Kosaka; Cindy Y Lee; Andy Watt; Tamar R Grossman; Michael G Rosenfeld; Ronald M Evans; Christopher K Glass
Journal:  Nature       Date:  2013-06-02       Impact factor: 49.962

  5 in total
  62 in total

1.  A Prognostic Signature for Lower Grade Gliomas Based on Expression of Long Non-Coding RNAs.

Authors:  Manjari Kiran; Ajay Chatrath; Xiwei Tang; Daniel Macrae Keenan; Anindya Dutta
Journal:  Mol Neurobiol       Date:  2018-11-03       Impact factor: 5.590

2.  Inhibition of Interleukin 1β (IL-1β) Expression by Anthrax Lethal Toxin (LeTx) Is Reversed by Histone Deacetylase 8 (HDAC8) Inhibition in Murine Macrophages.

Authors:  Soon-Duck Ha; Chantelle Reid; Shahab Meshkibaf; Sung Ouk Kim
Journal:  J Biol Chem       Date:  2016-02-24       Impact factor: 5.157

3.  Genetic Models Reveal cis and trans Immune-Regulatory Activities for lincRNA-Cox2.

Authors:  Roland Elling; Elektra K Robinson; Barbara Shapleigh; Stephen C Liapis; Sergio Covarrubias; Sol Katzman; Abigail F Groff; Zhaozhao Jiang; Shiuli Agarwal; Mona Motwani; Jennie Chan; Shruti Sharma; Elizabeth J Hennessy; Garret A FitzGerald; Michael T McManus; John L Rinn; Katherine A Fitzgerald; Susan Carpenter
Journal:  Cell Rep       Date:  2018-11-06       Impact factor: 9.423

4.  RNA element discovery from germ cell to blastocyst.

Authors:  Molly S Estill; Russ Hauser; Stephen A Krawetz
Journal:  Nucleic Acids Res       Date:  2019-03-18       Impact factor: 16.971

Review 5.  Cytokines and Long Noncoding RNAs.

Authors:  Susan Carpenter; Katherine A Fitzgerald
Journal:  Cold Spring Harb Perspect Biol       Date:  2018-06-01       Impact factor: 10.005

Review 6.  Transcriptional regulation by trithorax-group proteins.

Authors:  Robert E Kingston; John W Tamkun
Journal:  Cold Spring Harb Perspect Biol       Date:  2014-10-01       Impact factor: 10.005

Review 7.  Histone and DNA Modifications as Regulators of Neuronal Development and Function.

Authors:  Stavros Lomvardas; Tom Maniatis
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-07-01       Impact factor: 10.005

8.  Pseudogenes: A Novel Source of Trans-Acting Antisense RNAs.

Authors:  Nicholas C Lister; Per Johnsson; Paul D Waters; Kevin V Morris
Journal:  Methods Mol Biol       Date:  2021

9.  No Evidence for Recent Selection at FOXP2 among Diverse Human Populations.

Authors:  Elizabeth Grace Atkinson; Amanda Jane Audesse; Julia Adela Palacios; Dean Michael Bobo; Ashley Elizabeth Webb; Sohini Ramachandran; Brenna Mariah Henn
Journal:  Cell       Date:  2018-08-02       Impact factor: 41.582

10.  β Cells led astray by transcription factors and the company they keep.

Authors:  Peter Thompson; Anil Bhushan
Journal:  J Clin Invest       Date:  2016-12-12       Impact factor: 14.808

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