Literature DB >> 28716885

Cytokines and Long Noncoding RNAs.

Susan Carpenter1, Katherine A Fitzgerald2,3.   

Abstract

Cytokines and long noncoding RNAs (lncRNAs) are intertwined in the regulatory circuit controlling immunity. lncRNA expression levels are altered following cytokine stimulation in a cell-type-specific fashion. lncRNAs, in turn, regulate the inducible expression of cytokines following immune activation. These studies position lncRNAs as important regulators of gene expression within the complex pathways of the immune system. Our understanding of the functions of lncRNAs is just beginning. Current methodologies for functionally understanding how these transcripts mediate their effects are unable to keep up with the speed of genomic outputs cataloging thousands of these novel genes. In this review, we highlight the interplay between cytokines and lncRNAs and speculate on the future utility of these genes as potential biomarkers and therapeutic targets for the treatment of inflammatory disorders.
Copyright © 2018 Cold Spring Harbor Laboratory Press; all rights reserved.

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Year:  2018        PMID: 28716885      PMCID: PMC5983188          DOI: 10.1101/cshperspect.a028589

Source DB:  PubMed          Journal:  Cold Spring Harb Perspect Biol        ISSN: 1943-0264            Impact factor:   10.005


  90 in total

1.  Upregulation of long noncoding RNA TMEVPG1 enhances T helper type 1 cell response in patients with Sjögren syndrome.

Authors:  Juan Wang; Huiyong Peng; Jie Tian; Jie Ma; Xinyi Tang; Ke Rui; Xinyu Tian; Yungang Wang; Jianguo Chen; Liwei Lu; Huaxi Xu; Shengjun Wang
Journal:  Immunol Res       Date:  2016-04       Impact factor: 2.829

2.  Treatment of rheumatoid arthritis with a recombinant human tumor necrosis factor receptor (p75)-Fc fusion protein.

Authors:  L W Moreland; S W Baumgartner; M H Schiff; E A Tindall; R M Fleischmann; A L Weaver; R E Ettlinger; S Cohen; W J Koopman; K Mohler; M B Widmer; C M Blosch
Journal:  N Engl J Med       Date:  1997-07-17       Impact factor: 91.245

3.  Divergent transcription from active promoters.

Authors:  Amy C Seila; J Mauro Calabrese; Stuart S Levine; Gene W Yeo; Peter B Rahl; Ryan A Flynn; Richard A Young; Phillip A Sharp
Journal:  Science       Date:  2008-12-04       Impact factor: 47.728

4.  Unique signatures of long noncoding RNA expression in response to virus infection and altered innate immune signaling.

Authors:  Xinxia Peng; Lisa Gralinski; Christopher D Armour; Martin T Ferris; Matthew J Thomas; Sean Proll; Birgit G Bradel-Tretheway; Marcus J Korth; John C Castle; Matthew C Biery; Heather K Bouzek; David R Haynor; Matthew B Frieman; Mark Heise; Christopher K Raymond; Ralph S Baric; Michael G Katze
Journal:  mBio       Date:  2010-10-26       Impact factor: 7.867

5.  A long noncoding RNA associated with susceptibility to celiac disease.

Authors:  Ainara Castellanos-Rubio; Nora Fernandez-Jimenez; Radomir Kratchmarov; Xiaobing Luo; Govind Bhagat; Peter H R Green; Robert Schneider; Megerditch Kiledjian; Jose Ramon Bilbao; Sankar Ghosh
Journal:  Science       Date:  2016-04-01       Impact factor: 47.728

6.  Transcriptome analysis shows activation of circulating CD8+ T cells in patients with severe asthma.

Authors:  Eleni Tsitsiou; Andrew E Williams; Sterghios A Moschos; Ketan Patel; Christos Rossios; Xiaoying Jiang; Oona-Delpuech Adams; Patricia Macedo; Richard Booton; David Gibeon; Kian Fan Chung; Mark A Lindsay
Journal:  J Allergy Clin Immunol       Date:  2011-09-13       Impact factor: 10.793

7.  p50-associated COX-2 extragenic RNA (PACER) activates COX-2 gene expression by occluding repressive NF-κB complexes.

Authors:  Michal Krawczyk; Beverly M Emerson
Journal:  Elife       Date:  2014-04-29       Impact factor: 8.140

8.  The domain structure and distribution of Alu elements in long noncoding RNAs and mRNAs.

Authors:  Eugene Z Kim; Adam R Wespiser; Daniel R Caffrey
Journal:  RNA       Date:  2015-12-10       Impact factor: 4.942

Review 9.  The M1 and M2 paradigm of macrophage activation: time for reassessment.

Authors:  Fernando O Martinez; Siamon Gordon
Journal:  F1000Prime Rep       Date:  2014-03-03

10.  DDX5 and its associated lncRNA Rmrp modulate TH17 cell effector functions.

Authors:  Wendy Huang; Benjamin Thomas; Ryan A Flynn; Samuel J Gavzy; Lin Wu; Sangwon V Kim; Jason A Hall; Emily R Miraldi; Charles P Ng; Frank Rigo; Frank W Rigo; Sarah Meadows; Nina R Montoya; Natalia G Herrera; Ana I Domingos; Fraydoon Rastinejad; Richard M Myers; Frances V Fuller-Pace; Richard Bonneau; Howard Y Chang; Oreste Acuto; Dan R Littman
Journal:  Nature       Date:  2015-12-16       Impact factor: 49.962

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  36 in total

Review 1.  The Expanding Regulatory Mechanisms and Cellular Functions of Long Non-coding RNAs (lncRNAs) in Neuroinflammation.

Authors:  Shraddha Tripathi; Bakhya Shree; Stuti Mohapatra; Anirban Basu; Vivek Sharma
Journal:  Mol Neurobiol       Date:  2021-02-08       Impact factor: 5.590

2.  Nuclear lncRNA stabilization in the host response to bacterial infection.

Authors:  Mathias Munschauer; Jörg Vogel
Journal:  EMBO J       Date:  2018-06-22       Impact factor: 11.598

3.  Identification and Clinical Validation of 4-lncRNA Signature for Predicting Survival in Head and Neck Squamous Cell Carcinoma.

Authors:  Yanping Ji; Yu Xue
Journal:  Onco Targets Ther       Date:  2020-08-21       Impact factor: 4.147

Review 4.  The interplay of cytokine signaling and non-coding RNAs in head and neck squamous cell carcinoma pathobiology.

Authors:  Vivek Sharma
Journal:  Mol Biol Rep       Date:  2022-07-24       Impact factor: 2.742

5.  The potential role of serum expression profile of long non coding RNAs, Cox2 and HOTAIR as novel diagnostic biomarkers in systemic lupus erythematosus.

Authors:  Rania H Mahmoud; Nermeen A Fouad; Enas M Hefzy; Olfat G Shaker; Tarek I Ahmed; Hoda A Hussein; Maha H Nasr; Othman M Zaki; Noha K Abdelghaffar; Omayma O Abdelaleem
Journal:  PLoS One       Date:  2022-08-16       Impact factor: 3.752

6.  The interplay between lncRNAs, RNA-binding proteins and viral genome during SARS-CoV-2 infection reveals strong connections with regulatory events involved in RNA metabolism and immune response.

Authors:  Francisco J Enguita; Ana Lúcia Leitão; J Tyson McDonald; Viktorija Zaksas; Saswati Das; Diego Galeano; Deanne Taylor; Eve Syrkin Wurtele; Amanda Saravia-Butler; Stephen B Baylin; Robert Meller; D Marshall Porterfield; Douglas C Wallace; Jonathan C Schisler; Christopher E Mason; Afshin Beheshti
Journal:  Theranostics       Date:  2022-05-09       Impact factor: 11.600

7.  Identification of Prognostic Glycolysis-Related lncRNA Signature in Tumor Immune Microenvironment of Hepatocellular Carcinoma.

Authors:  Yang Bai; Haiping Lin; Jiaqi Chen; Yulian Wu; Shi'an Yu
Journal:  Front Mol Biosci       Date:  2021-04-22

Review 8.  CRNDE: an oncogenic long non-coding RNA in cancers.

Authors:  Ya Lu; Huanhuan Sha; Xun Sun; Yuan Zhang; Yang Wu; Junying Zhang; Hui Zhang; Jianzhong Wu; Jifeng Feng
Journal:  Cancer Cell Int       Date:  2020-05-12       Impact factor: 5.722

9.  Long noncoding RNA expression profile and association with SLEDAI score in monocyte-derived dendritic cells from patients with systematic lupus erythematosus.

Authors:  Yilun Wang; Shuang Chen; Sunyi Chen; Juan Du; Jinran Lin; Haihong Qin; Jie Wang; Jun Liang; Jinhua Xu
Journal:  Arthritis Res Ther       Date:  2018-07-11       Impact factor: 5.156

10.  Development and validation of ferroptosis-related lncRNAs signature for hepatocellular carcinoma.

Authors:  Jiaying Liang; Yaofeng Zhi; Wenhui Deng; Weige Zhou; Xuejun Li; Zheyou Cai; Zhijian Zhu; Jinxiang Zeng; Wanlan Wu; Ying Dong; Jin Huang; Yuzhuo Zhang; Shichao Xu; Yixin Feng; Fuping Ding; Jin Zhang
Journal:  PeerJ       Date:  2021-06-11       Impact factor: 2.984

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