Literature DB >> 25555724

Peptide toxicity prediction.

Sudheer Gupta1, Pallavi Kapoor, Kumardeep Chaudhary, Ankur Gautam, Rahul Kumar, Gajendra P S Raghava.   

Abstract

Last decade has witnessed the revival of interest in peptides as potential therapeutics candidates. However, one of the bottlenecks in the success of therapeutic peptides in clinics is their toxicity towards eukaryotic cells. Therefore, considerable efforts have been made over the years both in wet and dry lab to overcome this limitation. With the advances in peptide synthesis, now it is possible to fine-tune the physicochemical properties of peptides by incorporating several chemical modifications and thus to optimize the peptide functionality in order to minimize the toxicity without compromising their therapeutic activity. Also various in silico tools for peptide toxicity prediction and peptide designing have been developed, which facilitates designing of therapeutic peptides with desired toxicity. In this chapter, we have discussed both wet lab and dry lab approaches used to optimize peptide toxicity. More emphasis has been given to describe the in silico method, ToxinPred, to predict the toxicity of peptide and about how to design a peptide or protein with desired toxicity by mutating minimum number of amino acids.

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Year:  2015        PMID: 25555724     DOI: 10.1007/978-1-4939-2285-7_7

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  25 in total

1.  Immunoinformatics- and Bioinformatics-Assisted Computational Designing of a Novel Multiepitopes Vaccine Against Cancer-Causing Merkel Cell Polyomavirus.

Authors:  Nahlah Makki Almansour
Journal:  Front Microbiol       Date:  2022-06-28       Impact factor: 6.064

2.  The Impact of the CTHRSSVVC Peptide Upon Experimental Models of Trypanosoma cruzi Infection.

Authors:  Gabriela Rodrigues Leite; Denise da Gama Jaén Batista; Ana Lia Mazzeti; Rosemeire Aparecida Silva; Ademar Benévolo Lugão; Maria de Nazaré Correia Soeiro
Journal:  Front Cell Infect Microbiol       Date:  2022-05-06       Impact factor: 6.073

3.  Consensus Enolase of Trypanosoma Cruzi: Evaluation of Their Immunogenic Properties Using a Bioinformatics Approach.

Authors:  Alejandro Diaz-Hernandez; Maria Cristina Gonzalez-Vazquez; Minerva Arce-Fonseca; Olivia Rodríguez-Morales; Maria Lilia Cedillo-Ramirez; Alejandro Carabarin-Lima
Journal:  Life (Basel)       Date:  2022-05-18

4.  Machine Learning Prediction of Antimicrobial Peptides.

Authors:  Guangshun Wang; Iosif I Vaisman; Monique L van Hoek
Journal:  Methods Mol Biol       Date:  2022

5.  Ofatumumab and Granzyme B as immunotoxin against CD20 antigen.

Authors:  Fateme Sefid; Armina Alagheband Bahrami; Zahra Payandeh; Saeed Khalili; Ghasem Azamirad; Seyed Mehdy Kalantar; Maryam Touhidinia
Journal:  In Silico Pharmacol       Date:  2022-03-18

6.  Peptides interfering with protein-protein interactions in the ethylene signaling pathway delay tomato fruit ripening.

Authors:  Melanie M A Bisson; Mareike Kessenbrock; Lena Müller; Alexander Hofmann; Florian Schmitz; Simona M Cristescu; Georg Groth
Journal:  Sci Rep       Date:  2016-08-01       Impact factor: 4.379

7.  ProInflam: a webserver for the prediction of proinflammatory antigenicity of peptides and proteins.

Authors:  Sudheer Gupta; Midhun K Madhu; Ashok K Sharma; Vineet K Sharma
Journal:  J Transl Med       Date:  2016-06-14       Impact factor: 5.531

8.  IL17eScan: A Tool for the Identification of Peptides Inducing IL-17 Response.

Authors:  Sudheer Gupta; Parul Mittal; Midhun K Madhu; Vineet K Sharma
Journal:  Front Immunol       Date:  2017-10-31       Impact factor: 7.561

9.  Topical Delivery of Protein and Peptide Using Novel Cell Penetrating Peptide IMT-P8.

Authors:  Ankur Gautam; Jagpreet Singh Nanda; Jesse S Samuel; Manisha Kumari; Priyanka Priyanka; Gursimran Bedi; Samir K Nath; Garima Mittal; Neeraj Khatri; Gajendra Pal Singh Raghava
Journal:  Sci Rep       Date:  2016-05-18       Impact factor: 4.379

10.  High throughput and comprehensive approach to develop multiepitope vaccine against minacious COVID-19.

Authors:  Rupal Ojha; Nidhi Gupta; Biswajit Naik; Satyendra Singh; Vijay Kumar Verma; Dhaneswar Prusty; Vijay Kumar Prajapati
Journal:  Eur J Pharm Sci       Date:  2020-05-14       Impact factor: 4.384

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