Literature DB >> 35369404

Ofatumumab and Granzyme B as immunotoxin against CD20 antigen.

Fateme Sefid1,2, Armina Alagheband Bahrami3, Zahra Payandeh4, Saeed Khalili5, Ghasem Azamirad6, Seyed Mehdy Kalantar7, Maryam Touhidinia8.   

Abstract

Anti-CD20 antibodies such as ofatumumab has demonstrated efficacy in relapsed/refractory chronic lymphocytic leukemia, are among the most successful therapies to date. In this study, we have designed an immunotoxin composed of Granzyme B and the high affinity variant of Ofatumumab. Different simulation software applied to explore the structure of Granzyme B, a serine protease in cytotoxic lymphocytes granules as an apoptosis mediator was attached to its specific antibody structure (Ofatumumab) via an adaptor sequence. The accuracy, energy minimization and characterization of biological properties of the final structure were evaluated. Our computational outcomes indicated that the employed method for structure prediction has been successfully managed to design the immunotoxin structure. The precise and accurate design of the immune-therapeutic agents against cancer cells can be confirmed by employment of in-silico approaches. Consequently, based on this approach we could introduce a capable immunotoxin which specifically targeting CD20 in an accurate orientation and initiates cancer cell destruction by its toxin domain. Supplementary Information: The online version contains supplementary material available at 10.1007/s40203-022-00120-6.
© The Author(s), under exclusive licence to Springer-Verlag GmbH Germany, part of Springer Nature 2022.

Entities:  

Keywords:  Bioinformatics; CD20; Granzyme B; Immunotoxin; Ofatumumab

Year:  2022        PMID: 35369404      PMCID: PMC8933591          DOI: 10.1007/s40203-022-00120-6

Source DB:  PubMed          Journal:  In Silico Pharmacol        ISSN: 2193-9616


  44 in total

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Authors:  H Singh; G P Raghava
Journal:  Bioinformatics       Date:  2001-12       Impact factor: 6.937

2.  QMEAN: A comprehensive scoring function for model quality assessment.

Authors:  Pascal Benkert; Silvio C E Tosatto; Dietmar Schomburg
Journal:  Proteins       Date:  2008-04

3.  Peptide toxicity prediction.

Authors:  Sudheer Gupta; Pallavi Kapoor; Kumardeep Chaudhary; Ankur Gautam; Rahul Kumar; Gajendra P S Raghava
Journal:  Methods Mol Biol       Date:  2015

4.  A new hybrid coding for protein secondary structure prediction based on primary structure similarity.

Authors:  Zhong Li; Jing Wang; Shunpu Zhang; Qifeng Zhang; Wuming Wu
Journal:  Gene       Date:  2017-03-16       Impact factor: 3.688

5.  Affinity maturation and characterization of the ofatumumab monoclonal antibody.

Authors:  Zahra Payandeh; Masoumeh Rajabibazl; Yousef Mortazavi; Azam Rahimpour; Amir Hossein Taromchi; Siavoush Dastmalchi
Journal:  J Cell Biochem       Date:  2018-08-30       Impact factor: 4.429

Review 6.  The clinical application of monoclonal antibodies in chronic lymphocytic leukemia.

Authors:  Samantha M Jaglowski; Lapo Alinari; Rosa Lapalombella; Natarajan Muthusamy; John C Byrd
Journal:  Blood       Date:  2010-07-07       Impact factor: 22.113

7.  JPred4: a protein secondary structure prediction server.

Authors:  Alexey Drozdetskiy; Christian Cole; James Procter; Geoffrey J Barton
Journal:  Nucleic Acids Res       Date:  2015-04-16       Impact factor: 16.971

8.  SVMTriP: a method to predict antigenic epitopes using support vector machine to integrate tri-peptide similarity and propensity.

Authors:  Bo Yao; Lin Zhang; Shide Liang; Chi Zhang
Journal:  PLoS One       Date:  2012-09-12       Impact factor: 3.240

9.  Ofatumumab: a novel monoclonal anti-CD20 antibody.

Authors:  Thomas S Lin
Journal:  Pharmgenomics Pers Med       Date:  2010-05-10

Review 10.  Regulatory mechanisms of B cell responses and the implication in B cell-related diseases.

Authors:  Dong-Yan Tsai; Kuo-Hsuan Hung; Chia-Wei Chang; Kuo-I Lin
Journal:  J Biomed Sci       Date:  2019-09-01       Impact factor: 8.410

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  1 in total

1.  Improved Therapy of B-Cell Non-Hodgkin Lymphoma by Obinutuzumab-Dianthin Conjugates in Combination with the Endosomal Escape Enhancer SO1861.

Authors:  Hossein Panjideh; Nicole Niesler; Alexander Weng; Hendrik Fuchs
Journal:  Toxins (Basel)       Date:  2022-07-13       Impact factor: 5.075

  1 in total

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