Literature DB >> 25554279

A force calibration standard for magnetic tweezers.

Zhongbo Yu1, David Dulin1, Jelmer Cnossen1, Mariana Köber1, Maarten M van Oene1, Orkide Ordu1, Bojk A Berghuis1, Toivo Hensgens1, Jan Lipfert1, Nynke H Dekker1.   

Abstract

To study the behavior of biological macromolecules and enzymatic reactions under force, advances in single-molecule force spectroscopy have proven instrumental. Magnetic tweezers form one of the most powerful of these techniques, due to their overall simplicity, non-invasive character, potential for high throughput measurements, and large force range. Drawbacks of magnetic tweezers, however, are that accurate determination of the applied forces can be challenging for short biomolecules at high forces and very time-consuming for long tethers at low forces below ∼1 piconewton. Here, we address these drawbacks by presenting a calibration standard for magnetic tweezers consisting of measured forces for four magnet configurations. Each such configuration is calibrated for two commonly employed commercially available magnetic microspheres. We calculate forces in both time and spectral domains by analyzing bead fluctuations. The resulting calibration curves, validated through the use of different algorithms that yield close agreement in their determination of the applied forces, span a range from 100 piconewtons down to tens of femtonewtons. These generalized force calibrations will serve as a convenient resource for magnetic tweezers users and diminish variations between different experimental configurations or laboratories.

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Year:  2014        PMID: 25554279     DOI: 10.1063/1.4904148

Source DB:  PubMed          Journal:  Rev Sci Instrum        ISSN: 0034-6748            Impact factor:   1.523


  24 in total

1.  Strand separation establishes a sustained lock at the Tus-Ter replication fork barrier.

Authors:  Bojk A Berghuis; David Dulin; Zhi-Qiang Xu; Theo van Laar; Bronwen Cross; Richard Janissen; Slobodan Jergic; Nicholas E Dixon; Martin Depken; Nynke H Dekker
Journal:  Nat Chem Biol       Date:  2015-07-06       Impact factor: 15.040

2.  Ephemeral states in protein folding under force captured with a magnetic tweezers design.

Authors:  Rafael Tapia-Rojo; Edward C Eckels; Julio M Fernández
Journal:  Proc Natl Acad Sci U S A       Date:  2019-04-01       Impact factor: 11.205

Review 3.  Single-molecule approach for studying RNAP II transcription initiation using magnetic tweezers.

Authors:  Eric J Tomko; Eric A Galburt
Journal:  Methods       Date:  2019-03-18       Impact factor: 3.608

4.  The dynamics of forming a triplex in an artificial telomere inferred by DNA mechanics.

Authors:  Ning Li; Junli Wang; Kangkang Ma; Lin Liang; Lipei Mi; Wei Huang; Xiaofeng Ma; Zeyu Wang; Wei Zheng; Linyan Xu; Jun-Hu Chen; Zhongbo Yu
Journal:  Nucleic Acids Res       Date:  2019-09-05       Impact factor: 16.971

5.  Stokes trap for multiplexed particle manipulation and assembly using fluidics.

Authors:  Anish Shenoy; Christopher V Rao; Charles M Schroeder
Journal:  Proc Natl Acad Sci U S A       Date:  2016-03-28       Impact factor: 11.205

6.  Hysteresis in DNA compaction by Dps is described by an Ising model.

Authors:  Natalia N Vtyurina; David Dulin; Margreet W Docter; Anne S Meyer; Nynke H Dekker; Elio A Abbondanzieri
Journal:  Proc Natl Acad Sci U S A       Date:  2016-04-18       Impact factor: 11.205

7.  Integrated magnetic tweezers and single-molecule FRET for investigating the mechanical properties of nucleic acid.

Authors:  Xi Long; Joseph W Parks; Michael D Stone
Journal:  Methods       Date:  2016-06-15       Impact factor: 3.608

8.  Combined Magnetic Tweezers and Micro-mirror Total Internal Reflection Fluorescence Microscope for Single-Molecule Manipulation and Visualization.

Authors:  Yeonee Seol; Keir C Neuman
Journal:  Methods Mol Biol       Date:  2018

9.  Dynamics of TRF1 organizing a single human telomere.

Authors:  Xu Li; Meijie Wang; Wei Zheng; Wei Huang; Zeyu Wang; Kairang Jin; Lin Liu; Zhongbo Yu
Journal:  Nucleic Acids Res       Date:  2021-01-25       Impact factor: 16.971

10.  Extending the range for force calibration in magnetic tweezers.

Authors:  Peter Daldrop; Hergen Brutzer; Alexander Huhle; Dominik J Kauert; Ralf Seidel
Journal:  Biophys J       Date:  2015-05-19       Impact factor: 4.033

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