Literature DB >> 25553357

A leave-one-out cross-validation SAS macro for the identification of markers associated with survival.

Christel Rushing1, Anuradha Bulusu1, Herbert I Hurwitz2, Andrew B Nixon2, Herbert Pang3.   

Abstract

A proper internal validation is necessary for the development of a reliable and reproducible prognostic model for external validation. Variable selection is an important step for building prognostic models. However, not many existing approaches couple the ability to specify the number of covariates in the model with a cross-validation algorithm. We describe a user-friendly SAS macro that implements a score selection method and a leave-one-out cross-validation approach. We discuss the method and applications behind this algorithm, as well as details of the SAS macro.
Copyright © 2014 Elsevier Ltd. All rights reserved.

Entities:  

Keywords:  Clinical trials; Cross-validation; Prognostic markers; SAS macro; Score selection; Survival analysis

Mesh:

Substances:

Year:  2014        PMID: 25553357      PMCID: PMC4306627          DOI: 10.1016/j.compbiomed.2014.11.015

Source DB:  PubMed          Journal:  Comput Biol Med        ISSN: 0010-4825            Impact factor:   4.589


  14 in total

1.  A GENERALIZED WILCOXON TEST FOR COMPARING ARBITRARILY SINGLY-CENSORED SAMPLES.

Authors:  E A GEHAN
Journal:  Biometrika       Date:  1965-06       Impact factor: 2.445

2.  Reporting recommendations for tumor marker prognostic studies (REMARK): explanation and elaboration.

Authors:  Douglas G Altman; Lisa M McShane; Willi Sauerbrei; Sheila E Taube
Journal:  BMC Med       Date:  2012-05-29       Impact factor: 8.775

3.  Prediction error estimation: a comparison of resampling methods.

Authors:  Annette M Molinaro; Richard Simon; Ruth M Pfeiffer
Journal:  Bioinformatics       Date:  2005-05-19       Impact factor: 6.937

4.  Prognosis and prognostic research: Developing a prognostic model.

Authors:  Patrick Royston; Karel G M Moons; Douglas G Altman; Yvonne Vergouwe
Journal:  BMJ       Date:  2009-03-31

5.  On the C-statistics for evaluating overall adequacy of risk prediction procedures with censored survival data.

Authors:  Hajime Uno; Tianxi Cai; Michael J Pencina; Ralph B D'Agostino; L J Wei
Journal:  Stat Med       Date:  2011-01-13       Impact factor: 2.373

6.  Prognostic and predictive blood-based biomarkers in patients with advanced pancreatic cancer: results from CALGB80303 (Alliance).

Authors:  Andrew B Nixon; Herbert Pang; Mark D Starr; Paula N Friedman; Monica M Bertagnolli; Hedy L Kindler; Richard M Goldberg; Alan P Venook; Herbert I Hurwitz
Journal:  Clin Cancer Res       Date:  2013-10-04       Impact factor: 12.531

7.  Sample size considerations of prediction-validation methods in high-dimensional data for survival outcomes.

Authors:  Herbert Pang; Sin-Ho Jung
Journal:  Genet Epidemiol       Date:  2013-03-07       Impact factor: 2.135

8.  Development of a prognostic model for breast cancer survival in an open challenge environment.

Authors:  Wei-Yi Cheng; Tai-Hsien Ou Yang; Dimitris Anastassiou
Journal:  Sci Transl Med       Date:  2013-04-17       Impact factor: 17.956

9.  Integrated genomic analyses of ovarian carcinoma.

Authors: 
Journal:  Nature       Date:  2011-06-29       Impact factor: 49.962

10.  Integrative Pathway Analysis Using Graph-Based Learning with Applications to TCGA Colon and Ovarian Data.

Authors:  Andrew E Dellinger; Andrew B Nixon; Herbert Pang
Journal:  Cancer Inform       Date:  2014-07-28
View more
  11 in total

1.  Baseline Predictors of Response to Repetitive Task Practice in Chronic Stroke.

Authors:  Michael A Dimyan; Stacey Harcum; Elsa Ermer; Amy F Boos; Susan S Conroy; Fang Liu; Linda B Horn; Huichun Xu; Min Zhan; Hegang Chen; Jill Whitall; George F Wittenberg
Journal:  Neurorehabil Neural Repair       Date:  2022-05-26       Impact factor: 4.895

2.  What factors contribute to the Scapular Assistance Test result? A classification and regression tree approach.

Authors:  Larissa Pechincha Ribeiro; Rodrigo Py Gonçalves Barreto; Ricardo Augusto Souza Fernandes; Paula Rezende Camargo
Journal:  PLoS One       Date:  2022-10-21       Impact factor: 3.752

3.  Independent Prognostic Value of Intratumoral Heterogeneity and Immune Response Features by Automated Digital Immunohistochemistry Analysis in Early Hormone Receptor-Positive Breast Carcinoma.

Authors:  Dovile Zilenaite; Allan Rasmusson; Renaldas Augulis; Justinas Besusparis; Aida Laurinaviciene; Benoit Plancoulaine; Valerijus Ostapenko; Arvydas Laurinavicius
Journal:  Front Oncol       Date:  2020-06-16       Impact factor: 6.244

4.  Using Machine Learning to Predict Progression in the Gastric Precancerous Process in a Population from a Developing Country Who Underwent a Gastroscopy for Dyspeptic Symptoms.

Authors:  Susan Thapa; Lori A Fischbach; Robert Delongchamp; Mohammed F Faramawi; Mohammed S Orloff
Journal:  Gastroenterol Res Pract       Date:  2019-04-01       Impact factor: 2.260

5.  Noninvasive Evaluation of Liver Fibrosis Reverse Using Artificial Neural Network Model for Chronic Hepatitis B Patients.

Authors:  Wei Wei; Xiaoning Wu; Jialing Zhou; Yameng Sun; Yuanyuan Kong; Xu Yang
Journal:  Comput Math Methods Med       Date:  2019-07-21       Impact factor: 2.238

6.  Development of a risk score for colorectal cancer in Chinese males: A prospective cohort study.

Authors:  Lanwei Guo; Hongda Chen; Gang Wang; Zhangyan Lyu; Xiaoshuang Feng; Luopei Wei; Xin Li; Yan Wen; Ming Lu; Yuheng Chen; Jufang Shi; Jiansong Ren; Chunqing Lin; Xinyang Yu; Shuohua Chen; Shouling Wu; Ni Li; Min Dai; Jie He
Journal:  Cancer Med       Date:  2019-11-26       Impact factor: 4.452

7.  Biopsychosocial Aspects in Individuals with Acute and Chronic Rotator Cuff Related Shoulder Pain: Classification Based on a Decision Tree Analysis.

Authors:  Melina N Haik; Francisco Alburquerque-Sendín; Ricardo A S Fernandes; Danilo H Kamonseki; Lucas A Almeida; Richard E Liebano; Paula R Camargo
Journal:  Diagnostics (Basel)       Date:  2020-11-10

8.  ERCC2 gene single-nucleotide polymorphism as a prognostic factor for locally advanced head and neck carcinomas after definitive cisplatin-based radiochemotherapy.

Authors:  Maja Guberina; Ali Sak; Christoph Pöttgen; Ingeborg Tinhofer-Keilholz; Volker Budach; Panagiotis Balermpas; Jens Von der Grün; Claus Michael Rödel; Eleni Gkika; Anca-Ligia Grosu; Amir Abdollahi; Jürgen Debus; Claus Belka; Steffi Pigorsch; Stephani E Combs; David Mönnich; Daniel Zips; Chiara De-Colle; Stefan Welz; Annett Linge; Fabian Lohaus; Gustavo Baretton; Thomas Gauler; Michael Baumann; Mechthild Krause; Martin Schuler; Agnes Bankfalvi; Benedikt Höing; Stephan Lang; Martin Stuschke
Journal:  Pharmacogenomics J       Date:  2020-06-16       Impact factor: 3.550

9.  Selected Cytokines Serve as Potential Biomarkers for Predicting Liver Inflammation and Fibrosis in Chronic Hepatitis B Patients With Normal to Mildly Elevated Aminotransferases.

Authors:  Yong-Qiong Deng; Hong Zhao; An-Lin Ma; Ji-Yuan Zhou; Shi-Bin Xie; Xu-Qing Zhang; Da-Zhi Zhang; Qing Xie; Guo Zhang; Jia Shang; Jun Cheng; Wei-Feng Zhao; Zhi-Qiang Zou; Ming-Xiang Zhang; Gui-Qiang Wang
Journal:  Medicine (Baltimore)       Date:  2015-11       Impact factor: 1.817

10.  Tumor collagen framework from bright-field histology images predicts overall survival of breast carcinoma patients.

Authors:  Mindaugas Morkunas; Dovile Zilenaite; Aida Laurinaviciene; Povilas Treigys; Arvydas Laurinavicius
Journal:  Sci Rep       Date:  2021-07-29       Impact factor: 4.379

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.