Literature DB >> 25553045

Crystal structure of 2-phenyl-ethyl-amin-ium 4-nitro-phenolate monohydrate.

N Swarna Sowmya1, S Sampathkrishnan1, S Sudhahar2, R Mohan Kumar2, G Chakkaravarthi3.   

Abstract

In the title hydrated mol-ecular salt, C8H12N(+)·C6H4NO3 (-)·H2O, the conformation of the side chain in the cation is anti [C-C-C-N = 179.62 (12)°] and the dihedral angle between the aromatic ring and the nitro group in the anion is 3.34 (11)°. In the crystal, the components are linked by O-H⋯O and N-H⋯O hydrogen bonds, generating (10-1) sheets, which feature R 4 (4)(21) loops. The sheets inter-act by weak aromatic π-π stacking inter-actions [centroid-centroid distance = 3.896 (3) Å], forming a three-dimensional network.

Entities:  

Keywords:  2-phenyl­ethyl­aminium; 4-nitro­phenolate; O—H⋯O and N—H⋯O hydrogen bonds; crystal structure; hydrated salt; π–π stacking inter­actions

Year:  2014        PMID: 25553045      PMCID: PMC4257380          DOI: 10.1107/S1600536814025318

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Kanagathara et al. (2012 ▶); Lejon et al. (2006 ▶); Sankar et al. (2014 ▶); Smith et al. (2003 ▶).

Experimental

Crystal data

C8H12NC6H4NO3 −·H2O M = 278.30 Monoclinic, a = 30.381 (5) Å b = 6.100 (4) Å c = 21.357 (5) Å β = 131.876 (5)° V = 2947 (2) Å3 Z = 8 Mo Kα radiation μ = 0.09 mm−1 T = 295 K 0.26 × 0.24 × 0.20 mm

Data collection

Bruker Kappa APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.976, T max = 0.982 14174 measured reflections 3675 independent reflections 2748 reflections with I > 2σ(I) R int = 0.021

Refinement

R[F 2 > 2σ(F 2)] = 0.043 wR(F 2) = 0.124 S = 1.03 3675 reflections 200 parameters 6 restraints H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.21 e Å−3 Δρmin = −0.19 e Å−3

Data collection: APEX2 (Bruker, 2004 ▶); cell refinement: SAINT (Bruker, 2004 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814025318/hb7318sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814025318/hb7318Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814025318/hb7318Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814025318/hb7318fig1.tif The mol­ecular structure of (I), with 30% probability displacement ellipsoids for non-H atoms. Click here for additional data file. b . DOI: 10.1107/S1600536814025318/hb7318fig2.tif The packing of (I), viewed down b axis. Inter­molecular Hydrogen bonds are shown as dashed lines. H atoms not involved in hydrogen bonding have been omitted. CCDC reference: 1034880 Additional supporting information: crystallographic information; 3D view; checkCIF report
C8H12N+·C6H4NO3·H2OF(000) = 1184
Mr = 278.30Dx = 1.254 Mg m3
Monoclinic, C2/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -C 2ycCell parameters from 359 reflections
a = 30.381 (5) Åθ = 1.8–28.4°
b = 6.100 (4) ŵ = 0.09 mm1
c = 21.357 (5) ÅT = 295 K
β = 131.876 (5)°Block, colourless
V = 2947 (2) Å30.26 × 0.24 × 0.20 mm
Z = 8
Bruker Kappa APEXII CCD diffractometer3675 independent reflections
Radiation source: fine-focus sealed tube2748 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.021
ω and φ scanθmax = 28.4°, θmin = 1.8°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −38→40
Tmin = 0.976, Tmax = 0.982k = −7→8
14174 measured reflectionsl = −28→28
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.043H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.124w = 1/[σ2(Fo2) + (0.0561P)2 + 0.954P] where P = (Fo2 + 2Fc2)/3
S = 1.03(Δ/σ)max < 0.001
3675 reflectionsΔρmax = 0.21 e Å3
200 parametersΔρmin = −0.19 e Å3
6 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.0031 (5)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.32367 (5)0.9073 (2)0.49756 (8)0.0480 (3)
C20.31910 (8)1.1138 (3)0.51903 (11)0.0709 (4)
H20.28851.20630.47770.085*
C30.35989 (10)1.1848 (3)0.60213 (13)0.0850 (5)
H30.35641.32440.61590.102*
C40.40509 (9)1.0511 (4)0.66371 (11)0.0837 (5)
H40.43221.09900.71920.100*
C50.41005 (7)0.8477 (4)0.64310 (10)0.0770 (5)
H50.44070.75600.68460.092*
C60.36972 (6)0.7765 (3)0.56068 (9)0.0579 (3)
H60.37380.63690.54760.070*
C70.28038 (6)0.8233 (3)0.40816 (8)0.0578 (3)
H7A0.27830.92730.37190.069*
H7B0.29490.68560.40520.069*
C80.21941 (6)0.7889 (3)0.37618 (9)0.0606 (4)
H8A0.22140.68900.41330.073*
H8B0.20390.92760.37630.073*
C90.12653 (5)1.0077 (2)0.10944 (7)0.0446 (3)
C100.10095 (6)0.8472 (2)0.04638 (8)0.0530 (3)
H100.11910.71100.06010.064*
C110.04981 (6)0.8868 (2)−0.03490 (8)0.0567 (3)
H110.03340.7782−0.07560.068*
C120.02310 (5)1.0891 (2)−0.05554 (7)0.0498 (3)
C130.04662 (5)1.2508 (2)0.00428 (8)0.0521 (3)
H130.02811.3867−0.01050.062*
C140.09722 (6)1.2110 (2)0.08547 (8)0.0515 (3)
H140.11261.32030.12570.062*
N10.17925 (5)0.6981 (2)0.28992 (7)0.0575 (3)
H1A0.1771 (8)0.784 (3)0.2537 (9)0.081 (5)*
H1B0.1421 (5)0.687 (3)0.2687 (10)0.079 (5)*
H1C0.1932 (8)0.567 (2)0.2897 (12)0.087 (6)*
N2−0.03040 (5)1.1357 (3)−0.14047 (8)0.0693 (4)
O10.17576 (4)0.97214 (16)0.18676 (5)0.0576 (3)
O2−0.05190 (5)1.3215 (3)−0.15745 (8)0.0901 (4)
O3−0.05367 (6)0.9919 (3)−0.19366 (8)0.1055 (5)
O40.23008 (5)1.3211 (2)0.29355 (7)0.0714 (3)
H4A0.2588 (7)1.359 (4)0.2990 (14)0.107*
H4B0.2130 (9)1.221 (3)0.2576 (11)0.107*
U11U22U33U12U13U23
C10.0467 (6)0.0555 (7)0.0463 (6)−0.0004 (5)0.0329 (6)0.0024 (5)
C20.0845 (11)0.0564 (9)0.0748 (10)0.0107 (8)0.0544 (10)0.0094 (7)
C30.1192 (15)0.0617 (10)0.0949 (12)−0.0177 (8)0.0801 (11)−0.0224 (8)
C40.0833 (11)0.1073 (15)0.0598 (9)−0.0306 (9)0.0474 (9)−0.0248 (8)
C50.0545 (8)0.1111 (14)0.0486 (8)0.0072 (9)0.0275 (7)0.0073 (9)
C60.0506 (7)0.0676 (9)0.0533 (8)0.0079 (6)0.0337 (7)0.0011 (6)
C70.0457 (7)0.0815 (10)0.0448 (7)0.0011 (7)0.0296 (6)0.0002 (6)
C80.0491 (7)0.0805 (10)0.0542 (8)0.0003 (7)0.0353 (7)−0.0014 (7)
C90.0342 (5)0.0487 (7)0.0426 (6)−0.0014 (5)0.0222 (5)0.0067 (5)
C100.0499 (7)0.0454 (7)0.0563 (7)0.0011 (5)0.0324 (6)0.0035 (6)
C110.0539 (7)0.0599 (8)0.0485 (7)−0.0108 (6)0.0310 (6)−0.0067 (6)
C120.0355 (5)0.0668 (8)0.0396 (6)−0.0029 (5)0.0220 (5)0.0074 (6)
C130.0403 (6)0.0557 (7)0.0517 (7)0.0098 (5)0.0273 (6)0.0100 (6)
C140.0434 (6)0.0512 (7)0.0461 (7)0.0006 (5)0.0242 (6)−0.0023 (5)
N10.0390 (6)0.0707 (8)0.0471 (6)0.0026 (5)0.0222 (5)0.0091 (6)
N20.0460 (6)0.1001 (11)0.0440 (6)−0.0063 (7)0.0227 (6)0.0111 (7)
O10.0395 (5)0.0603 (6)0.0456 (5)0.0021 (4)0.0170 (4)0.0098 (4)
O20.0524 (6)0.1087 (10)0.0654 (7)0.0168 (6)0.0211 (6)0.0326 (7)
O30.0852 (9)0.1324 (13)0.0444 (6)−0.0151 (9)0.0207 (6)−0.0103 (7)
O40.0561 (6)0.0691 (7)0.0702 (7)−0.0085 (5)0.0344 (6)−0.0119 (5)
C1—C61.3761 (19)C9—C101.4066 (19)
C1—C21.379 (2)C9—C141.4084 (19)
C1—C71.5116 (18)C10—C111.3729 (19)
C2—C31.392 (3)C10—H100.9300
C2—H20.9300C11—C121.378 (2)
C3—C41.367 (3)C11—H110.9300
C3—H30.9300C12—C131.377 (2)
C4—C51.358 (3)C12—N21.4410 (17)
C4—H40.9300C13—C141.3677 (18)
C5—C61.382 (2)C13—H130.9300
C5—H50.9300C14—H140.9300
C6—H60.9300N1—H1A0.901 (9)
C7—C81.5010 (19)N1—H1B0.895 (9)
C7—H7A0.9700N1—H1C0.908 (9)
C7—H7B0.9700N2—O31.220 (2)
C8—N11.4795 (19)N2—O21.235 (2)
C8—H8A0.9700O4—H4A0.834 (9)
C8—H8B0.9700O4—H4B0.836 (10)
C9—O11.3091 (14)
C6—C1—C2117.79 (14)H8A—C8—H8B108.0
C6—C1—C7119.94 (13)O1—C9—C10121.89 (12)
C2—C1—C7122.27 (13)O1—C9—C14121.15 (12)
C1—C2—C3120.45 (16)C10—C9—C14116.96 (11)
C1—C2—H2119.8C11—C10—C9121.59 (13)
C3—C2—H2119.8C11—C10—H10119.2
C4—C3—C2120.58 (17)C9—C10—H10119.2
C4—C3—H3119.7C10—C11—C12119.33 (13)
C2—C3—H3119.7C10—C11—H11120.3
C5—C4—C3119.38 (16)C12—C11—H11120.3
C5—C4—H4120.3C13—C12—C11120.97 (12)
C3—C4—H4120.3C13—C12—N2118.50 (13)
C4—C5—C6120.29 (17)C11—C12—N2120.53 (13)
C4—C5—H5119.9C14—C13—C12119.79 (13)
C6—C5—H5119.9C14—C13—H13120.1
C1—C6—C5121.51 (15)C12—C13—H13120.1
C1—C6—H6119.2C13—C14—C9121.35 (12)
C5—C6—H6119.2C13—C14—H14119.3
C8—C7—C1113.03 (10)C9—C14—H14119.3
C8—C7—H7A109.0C8—N1—H1A112.1 (12)
C1—C7—H7A109.0C8—N1—H1B111.8 (11)
C8—C7—H7B109.0H1A—N1—H1B105.3 (16)
C1—C7—H7B109.0C8—N1—H1C109.7 (12)
H7A—C7—H7B107.8H1A—N1—H1C106.2 (16)
N1—C8—C7111.13 (11)H1B—N1—H1C111.6 (17)
N1—C8—H8A109.4O3—N2—O2121.46 (14)
C7—C8—H8A109.4O3—N2—C12119.74 (16)
N1—C8—H8B109.4O2—N2—C12118.79 (14)
C7—C8—H8B109.4H4A—O4—H4B106 (2)
C6—C1—C2—C3−0.3 (2)C9—C10—C11—C120.6 (2)
C7—C1—C2—C3179.97 (14)C10—C11—C12—C13−0.67 (19)
C1—C2—C3—C40.0 (3)C10—C11—C12—N2179.62 (12)
C2—C3—C4—C50.2 (3)C11—C12—C13—C140.01 (19)
C3—C4—C5—C6−0.1 (3)N2—C12—C13—C14179.73 (11)
C2—C1—C6—C50.4 (2)C12—C13—C14—C90.8 (2)
C7—C1—C6—C5−179.87 (13)O1—C9—C14—C13178.27 (12)
C4—C5—C6—C1−0.2 (2)C10—C9—C14—C13−0.82 (19)
C6—C1—C7—C8112.74 (15)C13—C12—N2—O3−176.42 (14)
C2—C1—C7—C8−67.52 (18)C11—C12—N2—O33.3 (2)
C1—C7—C8—N1−177.62 (13)C13—C12—N2—O23.03 (18)
O1—C9—C10—C11−178.94 (12)C11—C12—N2—O2−177.25 (13)
C14—C9—C10—C110.15 (18)
D—H···AD—HH···AD···AD—H···A
N1—H1A···O10.90 (1)1.81 (1)2.7108 (17)176 (18)
O4—H4B···O10.84 (1)1.90 (1)2.7262 (18)173 (2)
N1—H1B···O2i0.90 (1)2.11 (1)2.8937 (17)145 (15)
N1—H1C···O4ii0.91 (1)1.84 (1)2.742 (2)172 (18)
O4—H4A···O1iii0.83 (1)1.93 (1)2.7574 (16)175 (2)
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1AO10.90(1)1.81(1)2.7108(17)176(18)
O4H4BO10.84(1)1.90(1)2.7262(18)173(2)
N1H1BO2i 0.90(1)2.11(1)2.8937(17)145(15)
N1H1CO4ii 0.91(1)1.84(1)2.742(2)172(18)
O4H4AO1iii 0.83(1)1.93(1)2.7574(16)175(2)

Symmetry codes: (i) ; (ii) ; (iii) .

  4 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  4-Nitro-phenol-2,4,6-triamino-1,3,5-triazine-water (2/1/1).

Authors:  N Kanagathara; G Chakkaravarthi; M K Marchewka; S Gunasekaran; G Anbalagan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2012-06-30

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

4.  2-Carboxyl-atopyridinium-4-nitro-phenol (1/1).

Authors:  A Sankar; S Ambalatharasu; G Peramaiyan; G Chakkaravarthi; R Kanagadurai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-15
  4 in total

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