Literature DB >> 25553027

Crystal structure of 2-nitro-N-(5-nitro-1,3-thia-zol-2-yl)benzamide.

Rodolfo Moreno-Fuquen1, Diego F Sánchez1, Javier Ellena2.   

Abstract

In the title compound, C10H6N4O5S, the mean plane of the non-H atoms of the central n class="Chemical">amide fragment C-N-C(=O)-C [r.m.s. deviation = 0.0294 Å] forms dihedral angles of 12.48 (7) and 46.66 (9)° with the planes of the thia-zole and benzene rings, respectively. In the crystal, mol-ecules are linked by N-H⋯O hydrogen bonds, forming chains along [001]. In addition, weak C-H⋯O hydrogen bonds link these chains, forming a two-dimensional network, containing R (4) 4(28) ring motifs parallel to (100).

Entities:  

Keywords:  5-nitro-1,3-thia­zole derivative; crystal structure; fenilbenzamidas; hydrogen bonding

Year:  2014        PMID: 25553027      PMCID: PMC4257378          DOI: 10.1107/S1600536814024374

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For related structures, see: Bruno et al. (2010 ▶, 2013 ▶); Liu et al. (2013 ▶). For anti­viral and anti­parasitic properties of thia­zolides, see: Korba et al. (2008 ▶). For hydrogen-bond details, see: n class="Chemical">Nardelli (1995 ▶).

Experimental

Crystal data

C10H6N4O5S M = 294.25 Monoclinic, a = 9.6949 (2) Å b = 12.4192 (2) Å c = 9.8763 (2) Å β = 94.948 (1)° V = 1184.70 (4) Å3 Z = 4 Mo Kα radiation μ = 0.30 mm−1 T = 295 K 0.20 × 0.17 × 0.12 mm

Data collection

Nonius KappaCCD diffractometer 4714 measured reflections 2424 independent reflections 1867 reflections with I > 2σ(I) R int = 0.017

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.136 S = 0.97 2424 reflections 181 parameters H-atom parameters constrained Δρmax = 0.51 e Å−3 Δρmin = −0.27 e Å−3

Data collection: COLLECT (Nonius, 2000 ▶); cell refinement: SCALEPACK (Otwinowski & Minor, 1997 ▶); data reduction: DEn class="Chemical">NZO (Otwinowski & Minor, 1997 ▶) and SCALEPACK; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and Mercury (Macrae et al., 2006 ▶); software used to prepare material for publication: WinGX (Farrugia, 2012 ▶). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814024374/lh5737sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814024374/lh5737Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814024374/lh5737Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814024374/lh5737fig1.tif The mol­ecular structure of (I) with displacement ellipsoids drawn at the 50% probability level. H atoms are shown as spheres of arbitrary radius. Click here for additional data file. 4 4 . DOI: 10.1107/S1600536814024374/lh5737fig2.tif Part of the crystal structure of (I), showing the formation of R4 4(28) rings within a 2-D hydrogen-bonded network (dashed lines) running parallel to (100) [Symmetry codes: (i) x, −y+1/2, z-1/2; (ii) x, y-1, z]. CCDC reference: 1032923 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H6N4O5SF(000) = 600
Mr = 294.25Dx = 1.650 Mg m3
Monoclinic, P21/cMelting point: 515(1) K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 9.6949 (2) ÅCell parameters from 2543 reflections
b = 12.4192 (2) Åθ = 2.9–26.4°
c = 9.8763 (2) ŵ = 0.30 mm1
β = 94.948 (1)°T = 295 K
V = 1184.70 (4) Å3Block, brown
Z = 40.20 × 0.17 × 0.12 mm
Nonius KappaCCD diffractometer1867 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.017
Graphite monochromatorθmax = 26.4°, θmin = 3.3°
CCD rotation images, thick slices scansh = −12→12
4714 measured reflectionsk = −15→15
2424 independent reflectionsl = −12→12
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.136H-atom parameters constrained
S = 0.97w = 1/[σ2(Fo2) + (0.0901P)2 + 0.3259P] where P = (Fo2 + 2Fc2)/3
2424 reflections(Δ/σ)max < 0.001
181 parametersΔρmax = 0.51 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.33684 (6)0.47701 (4)0.20035 (5)0.0441 (2)
O30.22493 (17)0.28583 (12)0.26475 (14)0.0502 (4)
N10.4288 (2)0.68288 (15)0.16636 (19)0.0473 (4)
N20.3021 (2)0.46806 (14)−0.06343 (17)0.0463 (5)
N30.24829 (18)0.30650 (13)0.04092 (17)0.0420 (4)
H30.23900.2766−0.03790.050*
O20.4626 (2)0.75643 (14)0.09317 (19)0.0648 (5)
C60.0858 (2)0.07681 (18)0.1823 (2)0.0449 (5)
C50.1907 (2)0.13054 (16)0.12231 (19)0.0400 (5)
C100.2795 (2)0.06972 (18)0.0508 (2)0.0470 (5)
H100.35080.10320.00960.056*
C10.3749 (2)0.58660 (17)0.1039 (2)0.0421 (5)
C30.2907 (2)0.41287 (16)0.04889 (19)0.0395 (5)
C40.2206 (2)0.24675 (16)0.1504 (2)0.0401 (5)
O10.4402 (2)0.68685 (15)0.29129 (17)0.0706 (5)
C80.1593 (3)−0.09204 (19)0.1018 (2)0.0576 (6)
H80.1498−0.16640.09500.069*
N4−0.0150 (2)0.1388 (2)0.2531 (3)0.0650 (6)
C20.3492 (2)0.56887 (17)−0.0307 (2)0.0458 (5)
H20.36240.6212−0.09570.055*
C90.2627 (3)−0.04074 (18)0.0405 (2)0.0536 (6)
H90.3224−0.0807−0.00860.064*
O5−0.0429 (3)0.1061 (2)0.3650 (3)0.1011 (8)
C70.0691 (3)−0.03301 (19)0.1736 (2)0.0545 (6)
H7−0.0015−0.06700.21530.065*
O4−0.0647 (2)0.2185 (2)0.1957 (3)0.0905 (7)
U11U22U33U12U13U23
S10.0603 (4)0.0397 (3)0.0326 (3)−0.0048 (2)0.0058 (2)−0.0005 (2)
O30.0742 (11)0.0441 (8)0.0327 (8)−0.0080 (7)0.0074 (7)−0.0032 (6)
N10.0534 (11)0.0408 (10)0.0477 (11)−0.0016 (8)0.0051 (8)0.0001 (8)
N20.0615 (11)0.0440 (10)0.0331 (9)−0.0017 (8)0.0025 (8)0.0043 (7)
N30.0559 (11)0.0386 (9)0.0318 (9)−0.0032 (8)0.0054 (7)−0.0030 (7)
O20.0838 (13)0.0436 (9)0.0664 (11)−0.0114 (8)0.0033 (9)0.0092 (8)
C60.0490 (12)0.0471 (12)0.0388 (11)−0.0053 (10)0.0044 (9)−0.0067 (9)
C50.0490 (12)0.0394 (11)0.0313 (10)−0.0029 (9)0.0019 (8)−0.0002 (8)
C100.0580 (13)0.0458 (12)0.0382 (11)0.0012 (10)0.0100 (10)0.0018 (9)
C10.0463 (12)0.0400 (11)0.0403 (11)−0.0003 (9)0.0060 (9)0.0015 (8)
C30.0453 (11)0.0400 (11)0.0337 (10)0.0002 (9)0.0061 (8)0.0009 (8)
C40.0447 (11)0.0405 (11)0.0349 (10)−0.0008 (9)0.0029 (8)−0.0020 (8)
O10.1054 (15)0.0597 (11)0.0466 (10)−0.0183 (10)0.0060 (9)−0.0093 (8)
C80.0830 (18)0.0375 (12)0.0515 (14)−0.0025 (12)0.0019 (13)0.0042 (10)
N40.0504 (12)0.0725 (16)0.0738 (15)−0.0156 (11)0.0157 (11)−0.0284 (12)
C20.0539 (13)0.0413 (12)0.0426 (12)−0.0009 (10)0.0074 (10)0.0081 (9)
C90.0742 (16)0.0411 (12)0.0464 (13)0.0118 (11)0.0107 (11)0.0009 (10)
O50.0955 (17)0.130 (2)0.0857 (16)−0.0291 (15)0.0539 (14)−0.0220 (14)
C70.0674 (15)0.0508 (14)0.0458 (13)−0.0162 (11)0.0072 (11)0.0017 (10)
O40.0802 (15)0.0786 (15)0.1127 (18)0.0220 (12)0.0079 (13)−0.0326 (14)
S1—C31.720 (2)C5—C101.384 (3)
S1—C11.720 (2)C5—C41.493 (3)
O3—C41.227 (2)C10—C91.384 (3)
N1—O21.227 (2)C10—H100.9300
N1—O11.230 (2)C1—C21.349 (3)
N1—C11.424 (3)C8—C91.372 (4)
N2—C31.317 (2)C8—C71.383 (4)
N2—C21.362 (3)C8—H80.9300
N3—C41.357 (3)N4—O41.218 (4)
N3—C31.384 (3)N4—O51.230 (3)
N3—H30.8600C2—H20.9300
C6—C71.375 (3)C9—H90.9300
C6—C51.391 (3)C7—H70.9300
C6—N41.468 (3)
C3—S1—C186.39 (10)N2—C3—S1117.22 (16)
O2—N1—O1123.74 (19)N3—C3—S1123.06 (15)
O2—N1—C1118.47 (18)O3—C4—N3121.59 (19)
O1—N1—C1117.78 (18)O3—C4—C5122.95 (18)
C3—N2—C2109.22 (17)N3—C4—C5115.42 (17)
C4—N3—C3123.71 (17)C9—C8—C7119.9 (2)
C4—N3—H3118.1C9—C8—H8120.0
C3—N3—H3118.1C7—C8—H8120.0
C7—C6—C5122.4 (2)O4—N4—O5125.2 (3)
C7—C6—N4118.1 (2)O4—N4—C6117.3 (2)
C5—C6—N4119.5 (2)O5—N4—C6117.5 (3)
C10—C5—C6117.7 (2)C1—C2—N2114.44 (18)
C10—C5—C4120.18 (19)C1—C2—H2122.8
C6—C5—C4121.46 (18)N2—C2—H2122.8
C5—C10—C9120.3 (2)C8—C9—C10120.9 (2)
C5—C10—H10119.9C8—C9—H9119.6
C9—C10—H10119.9C10—C9—H9119.6
C2—C1—N1126.41 (19)C6—C7—C8118.8 (2)
C2—C1—S1112.72 (16)C6—C7—H7120.6
N1—C1—S1120.87 (16)C8—C7—H7120.6
N2—C3—N3119.67 (18)
C7—C6—C5—C100.5 (3)C3—N3—C4—O33.8 (3)
N4—C6—C5—C10−176.9 (2)C3—N3—C4—C5−173.84 (18)
C7—C6—C5—C4−170.5 (2)C10—C5—C4—O3−127.2 (2)
N4—C6—C5—C412.1 (3)C6—C5—C4—O343.6 (3)
C6—C5—C10—C90.1 (3)C10—C5—C4—N350.3 (3)
C4—C5—C10—C9171.2 (2)C6—C5—C4—N3−138.8 (2)
O2—N1—C1—C2−4.0 (3)C7—C6—N4—O4−131.6 (3)
O1—N1—C1—C2176.9 (2)C5—C6—N4—O445.9 (3)
O2—N1—C1—S1175.42 (16)C7—C6—N4—O548.1 (3)
O1—N1—C1—S1−3.7 (3)C5—C6—N4—O5−134.4 (2)
C3—S1—C1—C21.01 (17)N1—C1—C2—N2177.9 (2)
C3—S1—C1—N1−178.52 (19)S1—C1—C2—N2−1.6 (3)
C2—N2—C3—N3−178.09 (18)C3—N2—C2—C11.4 (3)
C2—N2—C3—S1−0.6 (3)C7—C8—C9—C100.8 (4)
C4—N3—C3—N2−173.3 (2)C5—C10—C9—C8−0.7 (3)
C4—N3—C3—S19.4 (3)C5—C6—C7—C8−0.5 (3)
C1—S1—C3—N2−0.22 (18)N4—C6—C7—C8177.0 (2)
C1—S1—C3—N3177.18 (19)C9—C8—C7—C6−0.2 (4)
D—H···AD—HH···AD···AD—H···A
N3—H3···O3i0.862.092.949 (2)175
C9—H9···O2ii0.932.593.193 (3)123
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N3H3O3i 0.862.092.949(2)175
C9H9O2ii 0.932.593.193(3)123

Symmetry codes: (i) ; (ii) .

  3 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  Nitazoxanide, tizoxanide and other thiazolides are potent inhibitors of hepatitis B virus and hepatitis C virus replication.

Authors:  Brent E Korba; Abigail B Montero; Kristine Farrar; Karen Gaye; Sampa Mukerjee; Marc S Ayers; Jean-François Rossignol
Journal:  Antiviral Res       Date:  2007-09-04       Impact factor: 5.970

3.  N-(5-Nitro-1,3-thia-zol-2-yl)-4-(tri-fluoro-meth-yl)benzamide.

Authors:  Xi-Wang Liu; Han Zhang; Ya-Jun Yang; Jian-Yong Li; Ji-Yu Zhang
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-05-22
  3 in total
  1 in total

1.  Crystal structure of 2-fluoro-N-(1,3-thia-zol-2-yl)benzamide.

Authors:  Rodolfo Moreno-Fuquen; Juan C Castillo; Diana Becerra; Hernando Camargo; José A Henao
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-10-24
  1 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.