Literature DB >> 23795106

N-(5-Nitro-1,3-thia-zol-2-yl)-4-(tri-fluoro-meth-yl)benzamide.

Xi-Wang Liu1, Han Zhang, Ya-Jun Yang, Jian-Yong Li, Ji-Yu Zhang.   

Abstract

There are two independent and conformationally dissimilar mol-ecules (A and B) in the asymmetric unit of the title compound, C11H6F3N3O3S; the dihedral angles between the benzene and thia-zole rings are 33.8 (2)° in A and 59.7 (2)° in B. The similarity of the C-N bond lengths in the amide group [1.379 (5) and 1.358 (5) Å for A, and 1.365 (5) and 1.363 (5) Å for B] indicates the presence of conjugation between the two rings. In the crystal, mol-ecules are linked by N-H⋯N hydrogen bonds, forming chains extending along [010]; weak N-H⋯Oamide inter-actions are also present in the structure.

Entities:  

Year:  2013        PMID: 23795106      PMCID: PMC3685087          DOI: 10.1107/S1600536813011264

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the anti­parasitic activity of nitazoxanide, see: Fox & Saravolatz (2005 ▶) and for the anti­bacterial activity of thia­zolides, see: Gargala et al. (2010 ▶); Stachulski et al. (2011 ▶). For the synthesis and anti­bacterial activity of the title compound, see: Ballard et al. (2011 ▶).

Experimental

Crystal data

C11H6F3N3O3S M = 317.26 Monoclinic, a = 12.362 (4) Å b = 8.946 (3) Å c = 23.261 (8) Å β = 100.762 (4)° V = 2527.2 (15) Å3 Z = 8 Mo Kα radiation μ = 0.31 mm−1 T = 296 K 0.34 × 0.32 × 0.25 mm

Data collection

Bruker APEXII CCD diffractometer Absorption correction: multi-scan (SADABS; Sheldrick, 1996 ▶) T min = 0.903, T max = 0.927 11671 measured reflections 4588 independent reflections 3183 reflections with I > 2σ(I) R int = 0.039

Refinement

R[F 2 > 2σ(F 2)] = 0.069 wR(F 2) = 0.175 S = 1.06 4588 reflections 379 parameters H-atom parameters constrained Δρmax = 0.50 e Å−3 Δρmin = −0.48 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXTL. Click here for additional data file. Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536813011264/zs2257sup1.cif Click here for additional data file. Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813011264/zs2257Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813011264/zs2257Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C11H6F3N3O3SF(000) = 1280
Mr = 317.26Dx = 1.668 Mg m3
Monoclinic, P21/cMelting point = 487–489 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 12.362 (4) ÅCell parameters from 2723 reflections
b = 8.946 (3) Åθ = 2.4–24.6°
c = 23.261 (8) ŵ = 0.31 mm1
β = 100.762 (4)°T = 296 K
V = 2527.2 (15) Å3Block, colourless
Z = 80.34 × 0.32 × 0.25 mm
Bruker APEXII CCD diffractometer4588 independent reflections
Radiation source: fine-focus sealed tube3183 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.039
φ and ω scansθmax = 25.5°, θmin = 2.2°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −14→14
Tmin = 0.903, Tmax = 0.927k = −9→10
11671 measured reflectionsl = −28→26
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.069Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.175H-atom parameters constrained
S = 1.06w = 1/[σ2(Fo2) + (0.0692P)2 + 3.2322P] where P = (Fo2 + 2Fc2)/3
4588 reflections(Δ/σ)max = 0.001
379 parametersΔρmax = 0.50 e Å3
0 restraintsΔρmin = −0.48 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.2871 (3)0.2306 (5)0.10652 (16)0.0387 (10)
C20.2390 (3)0.1247 (5)0.06679 (17)0.0448 (11)
H20.17990.06870.07430.054*
C30.2787 (4)0.1018 (5)0.01590 (18)0.0483 (11)
H30.24670.0296−0.01070.058*
C40.3654 (3)0.1855 (5)0.00447 (18)0.0471 (11)
C50.4138 (4)0.2911 (6)0.0439 (2)0.0549 (13)
H50.47210.34810.03600.066*
C60.3758 (3)0.3125 (5)0.09514 (19)0.0498 (12)
H60.40980.38210.12230.060*
C70.4053 (5)0.1639 (8)−0.0515 (2)0.0687 (16)
C80.2493 (3)0.2599 (5)0.16232 (17)0.0391 (10)
C90.0895 (3)0.2764 (5)0.20673 (16)0.0357 (9)
C10−0.0463 (4)0.3137 (5)0.25281 (17)0.0459 (11)
H10−0.11900.31520.25830.055*
C110.0372 (3)0.3595 (5)0.29379 (16)0.0388 (10)
C120.3086 (3)0.8380 (5)0.34839 (17)0.0401 (10)
C130.3064 (4)0.7008 (5)0.32116 (18)0.0461 (11)
H130.28200.61660.33840.055*
C140.3405 (4)0.6892 (5)0.26822 (19)0.0490 (11)
H140.34040.59650.25020.059*
C150.3746 (3)0.8129 (5)0.24206 (18)0.0436 (10)
C160.3762 (4)0.9502 (6)0.2691 (2)0.0554 (12)
H160.39841.03480.25120.066*
C170.3448 (4)0.9620 (6)0.32261 (19)0.0545 (12)
H170.34811.05410.34140.065*
C180.4075 (4)0.8034 (7)0.1841 (2)0.0587 (13)
C190.2738 (3)0.8557 (5)0.40602 (17)0.0426 (10)
C200.1252 (3)0.8112 (5)0.45709 (16)0.0377 (9)
C210.0747 (4)0.8551 (5)0.54822 (17)0.0417 (10)
C22−0.0063 (4)0.7988 (5)0.50768 (17)0.0454 (11)
H22−0.07630.77930.51510.054*
F10.4126 (4)0.0182 (5)−0.06394 (15)0.1155 (15)
F20.3376 (3)0.2148 (5)−0.09695 (13)0.0960 (12)
F30.5002 (3)0.2196 (7)−0.05158 (16)0.158 (2)
F40.4257 (4)0.6685 (5)0.16786 (16)0.1311 (18)
F50.3324 (4)0.8501 (5)0.14227 (14)0.1252 (17)
F60.4934 (4)0.8772 (8)0.18052 (17)0.184 (3)
N10.1382 (3)0.2403 (4)0.16086 (13)0.0382 (8)
H10.09820.20390.12980.046*
N2−0.0176 (3)0.2646 (4)0.20246 (14)0.0445 (9)
N30.0305 (3)0.4175 (4)0.34971 (15)0.0446 (9)
N40.1728 (3)0.7979 (4)0.40900 (13)0.0416 (9)
H40.13750.75070.37910.050*
N50.0219 (3)0.7725 (4)0.45493 (14)0.0437 (9)
N60.0665 (4)0.8983 (4)0.60621 (15)0.0503 (10)
O10.3090 (2)0.3016 (4)0.20642 (12)0.0560 (9)
O20.1160 (3)0.4596 (4)0.38111 (13)0.0638 (9)
O3−0.0597 (3)0.4226 (4)0.36369 (13)0.0587 (9)
O40.3288 (2)0.9184 (4)0.44772 (13)0.0632 (10)
O50.1513 (3)0.9334 (4)0.63961 (14)0.0713 (11)
O6−0.0250 (3)0.8991 (4)0.61955 (13)0.0647 (10)
S10.16224 (9)0.34362 (13)0.27209 (4)0.0429 (3)
S20.19504 (9)0.88052 (14)0.52279 (4)0.0469 (3)
U11U22U33U12U13U23
C10.037 (2)0.045 (3)0.035 (2)0.0080 (19)0.0076 (17)0.0032 (19)
C20.046 (3)0.046 (3)0.045 (2)−0.001 (2)0.014 (2)−0.002 (2)
C30.051 (3)0.051 (3)0.044 (2)0.002 (2)0.012 (2)−0.006 (2)
C40.041 (2)0.062 (3)0.039 (2)0.012 (2)0.0087 (19)0.004 (2)
C50.041 (3)0.072 (4)0.056 (3)−0.003 (2)0.020 (2)0.000 (3)
C60.041 (2)0.061 (3)0.048 (3)−0.008 (2)0.010 (2)−0.011 (2)
C70.063 (3)0.103 (5)0.046 (3)0.000 (3)0.024 (3)−0.009 (3)
C80.041 (2)0.041 (3)0.036 (2)0.0028 (19)0.0087 (18)0.0055 (19)
C90.043 (2)0.034 (2)0.0299 (19)−0.0021 (18)0.0073 (17)0.0037 (17)
C100.044 (2)0.058 (3)0.037 (2)0.001 (2)0.0133 (19)0.001 (2)
C110.048 (2)0.040 (3)0.030 (2)0.0028 (19)0.0099 (18)0.0008 (17)
C120.030 (2)0.049 (3)0.041 (2)−0.0009 (19)0.0060 (17)−0.004 (2)
C130.051 (3)0.044 (3)0.045 (2)0.000 (2)0.016 (2)0.002 (2)
C140.051 (3)0.048 (3)0.050 (3)0.004 (2)0.016 (2)−0.006 (2)
C150.038 (2)0.053 (3)0.040 (2)0.004 (2)0.0078 (18)0.003 (2)
C160.064 (3)0.049 (3)0.056 (3)−0.007 (2)0.018 (2)0.005 (2)
C170.068 (3)0.047 (3)0.053 (3)−0.005 (2)0.023 (2)−0.008 (2)
C180.059 (3)0.074 (4)0.045 (3)0.003 (3)0.016 (2)0.005 (3)
C190.039 (2)0.050 (3)0.037 (2)0.002 (2)0.0039 (18)−0.003 (2)
C200.039 (2)0.042 (3)0.031 (2)0.0013 (19)0.0056 (17)−0.0026 (18)
C210.056 (3)0.037 (3)0.033 (2)0.001 (2)0.0115 (19)0.0004 (18)
C220.050 (3)0.051 (3)0.039 (2)0.000 (2)0.0152 (19)0.003 (2)
F10.169 (4)0.117 (3)0.075 (2)0.048 (3)0.059 (2)−0.008 (2)
F20.112 (3)0.133 (3)0.0448 (17)0.011 (2)0.0194 (17)0.0211 (19)
F30.090 (3)0.313 (7)0.089 (3)−0.080 (4)0.064 (2)−0.076 (3)
F40.226 (5)0.101 (3)0.092 (3)0.061 (3)0.098 (3)0.013 (2)
F50.147 (4)0.181 (4)0.0498 (19)0.073 (3)0.024 (2)0.027 (2)
F60.158 (4)0.329 (8)0.090 (3)−0.157 (5)0.085 (3)−0.081 (4)
N10.0384 (19)0.046 (2)0.0310 (17)−0.0039 (16)0.0083 (14)−0.0060 (15)
N20.038 (2)0.062 (3)0.0349 (18)−0.0076 (18)0.0106 (15)−0.0049 (17)
N30.065 (3)0.036 (2)0.0355 (19)0.0040 (18)0.0157 (19)0.0006 (16)
N40.0377 (19)0.055 (2)0.0325 (17)−0.0058 (16)0.0077 (14)−0.0091 (16)
N50.044 (2)0.053 (2)0.0353 (18)−0.0043 (18)0.0119 (15)−0.0030 (16)
N60.081 (3)0.034 (2)0.037 (2)0.002 (2)0.014 (2)−0.0004 (17)
O10.0428 (17)0.088 (3)0.0343 (16)0.0002 (17)0.0013 (13)−0.0087 (16)
O20.078 (2)0.073 (3)0.0379 (17)−0.006 (2)0.0045 (17)−0.0150 (17)
O30.073 (2)0.056 (2)0.0556 (19)0.0123 (17)0.0336 (17)−0.0024 (16)
O40.0457 (18)0.097 (3)0.0468 (18)−0.0171 (18)0.0080 (15)−0.0243 (18)
O50.101 (3)0.070 (3)0.0410 (18)−0.009 (2)0.0067 (19)−0.0184 (17)
O60.092 (3)0.058 (2)0.054 (2)0.0106 (19)0.0380 (19)0.0038 (16)
S10.0430 (6)0.0545 (8)0.0309 (5)−0.0044 (5)0.0063 (4)−0.0053 (5)
S20.0490 (7)0.0570 (8)0.0335 (5)−0.0026 (6)0.0046 (5)−0.0070 (5)
C1—C21.379 (6)C13—C141.378 (6)
C1—C61.385 (6)C13—H130.9300
C1—C81.483 (5)C14—C151.367 (6)
C2—C31.378 (6)C14—H140.9300
C2—H20.9300C15—C161.379 (6)
C3—C41.374 (6)C15—C181.482 (6)
C3—H30.9300C16—C171.374 (6)
C4—C51.375 (6)C16—H160.9300
C4—C71.488 (6)C17—H170.9300
C5—C61.372 (6)C18—F61.266 (6)
C5—H50.9300C18—F51.283 (6)
C6—H60.9300C18—F41.297 (6)
C7—F31.275 (6)C19—O41.213 (5)
C7—F21.303 (6)C19—N41.365 (5)
C7—F11.342 (7)C20—N51.314 (5)
C8—O11.205 (5)C20—N41.363 (5)
C8—N11.379 (5)C20—S21.724 (4)
C9—N21.314 (5)C21—C221.339 (6)
C9—N11.358 (5)C21—N61.425 (5)
C9—S11.723 (4)C21—S21.716 (4)
C10—C111.333 (6)C22—N51.358 (5)
C10—N21.359 (5)C22—H220.9300
C10—H100.9300N1—H10.8600
C11—N31.417 (5)N3—O31.220 (4)
C11—S11.719 (4)N3—O21.227 (5)
C12—C171.375 (6)N4—H40.8600
C12—C131.379 (6)N6—O51.224 (5)
C12—C191.491 (5)N6—O61.227 (5)
C2—C1—C6119.5 (4)C13—C14—H14119.7
C2—C1—C8122.8 (4)C14—C15—C16119.8 (4)
C6—C1—C8117.7 (4)C14—C15—C18121.3 (4)
C3—C2—C1120.0 (4)C16—C15—C18118.9 (4)
C3—C2—H2120.0C17—C16—C15120.0 (4)
C1—C2—H2120.0C17—C16—H16120.0
C2—C3—C4120.1 (4)C15—C16—H16120.0
C2—C3—H3120.0C16—C17—C12120.2 (4)
C4—C3—H3120.0C16—C17—H17119.9
C5—C4—C3120.2 (4)C12—C17—H17119.9
C5—C4—C7120.0 (4)F6—C18—F5106.1 (5)
C3—C4—C7119.8 (4)F6—C18—F4105.9 (5)
C6—C5—C4119.9 (4)F5—C18—F4102.8 (5)
C6—C5—H5120.0F6—C18—C15114.0 (4)
C4—C5—H5120.0F5—C18—C15112.9 (4)
C5—C6—C1120.2 (4)F4—C18—C15114.2 (4)
C5—C6—H6119.9O4—C19—N4121.1 (4)
C1—C6—H6119.9O4—C19—C12123.8 (4)
F3—C7—F2108.3 (5)N4—C19—C12115.2 (3)
F3—C7—F1106.3 (5)N5—C20—N4120.7 (3)
F2—C7—F1102.9 (5)N5—C20—S2116.8 (3)
F3—C7—C4114.0 (5)N4—C20—S2122.5 (3)
F2—C7—C4113.4 (4)C22—C21—N6126.4 (4)
F1—C7—C4111.2 (5)C22—C21—S2112.9 (3)
O1—C8—N1120.6 (4)N6—C21—S2120.6 (3)
O1—C8—C1123.9 (4)C21—C22—N5114.7 (4)
N1—C8—C1115.6 (3)C21—C22—H22122.7
N2—C9—N1120.6 (3)N5—C22—H22122.7
N2—C9—S1116.6 (3)C9—N1—C8122.4 (3)
N1—C9—S1122.8 (3)C9—N1—H1118.8
C11—C10—N2115.0 (4)C8—N1—H1118.8
C11—C10—H10122.5C9—N2—C10109.3 (3)
N2—C10—H10122.5O3—N3—O2124.0 (4)
C10—C11—N3126.8 (4)O3—N3—C11118.1 (4)
C10—C11—S1112.6 (3)O2—N3—C11117.9 (4)
N3—C11—S1120.6 (3)C19—N4—C20123.2 (3)
C17—C12—C13119.9 (4)C19—N4—H4118.4
C17—C12—C19118.6 (4)C20—N4—H4118.4
C13—C12—C19121.6 (4)C20—N5—C22109.4 (3)
C14—C13—C12119.6 (4)O5—N6—O6124.0 (4)
C14—C13—H13120.2O5—N6—C21117.8 (4)
C12—C13—H13120.2O6—N6—C21118.2 (4)
C15—C14—C13120.6 (4)C11—S1—C986.47 (19)
C15—C14—H14119.7C21—S2—C2086.26 (19)
C6—C1—C2—C3−0.6 (6)C16—C15—C18—F4166.3 (5)
C8—C1—C2—C3−179.4 (4)C17—C12—C19—O4−50.0 (6)
C1—C2—C3—C4−0.6 (7)C13—C12—C19—O4129.2 (5)
C2—C3—C4—C50.7 (7)C17—C12—C19—N4129.0 (4)
C2—C3—C4—C7−177.9 (4)C13—C12—C19—N4−51.8 (6)
C3—C4—C5—C60.4 (7)N6—C21—C22—N5177.4 (4)
C7—C4—C5—C6179.1 (5)S2—C21—C22—N50.2 (5)
C4—C5—C6—C1−1.7 (7)N2—C9—N1—C8175.9 (4)
C2—C1—C6—C51.8 (7)S1—C9—N1—C8−2.5 (6)
C8—C1—C6—C5−179.4 (4)O1—C8—N1—C94.8 (6)
C5—C4—C7—F317.1 (8)C1—C8—N1—C9−173.6 (4)
C3—C4—C7—F3−164.2 (5)N1—C9—N2—C10−177.1 (4)
C5—C4—C7—F2−107.4 (6)S1—C9—N2—C101.3 (5)
C3—C4—C7—F271.3 (7)C11—C10—N2—C9−0.6 (6)
C5—C4—C7—F1137.3 (5)C10—C11—N3—O32.6 (7)
C3—C4—C7—F1−44.1 (7)S1—C11—N3—O3−178.0 (3)
C2—C1—C8—O1149.3 (4)C10—C11—N3—O2−177.3 (4)
C6—C1—C8—O1−29.5 (6)S1—C11—N3—O22.1 (5)
C2—C1—C8—N1−32.4 (6)O4—C19—N4—C202.8 (7)
C6—C1—C8—N1148.8 (4)C12—C19—N4—C20−176.2 (4)
N2—C10—C11—N3179.1 (4)N5—C20—N4—C19170.2 (4)
N2—C10—C11—S1−0.3 (5)S2—C20—N4—C19−9.0 (6)
C17—C12—C13—C140.0 (7)N4—C20—N5—C22−178.9 (4)
C19—C12—C13—C14−179.2 (4)S2—C20—N5—C220.4 (5)
C12—C13—C14—C15−1.2 (7)C21—C22—N5—C20−0.3 (6)
C13—C14—C15—C160.8 (7)C22—C21—N6—O5172.6 (4)
C13—C14—C15—C18−177.6 (4)S2—C21—N6—O5−10.3 (6)
C14—C15—C16—C170.8 (7)C22—C21—N6—O6−7.9 (7)
C18—C15—C16—C17179.2 (4)S2—C21—N6—O6169.2 (3)
C15—C16—C17—C12−2.0 (7)C10—C11—S1—C90.8 (4)
C13—C12—C17—C161.6 (7)N3—C11—S1—C9−178.7 (4)
C19—C12—C17—C16−179.2 (4)N2—C9—S1—C11−1.2 (3)
C14—C15—C18—F6−137.1 (6)N1—C9—S1—C11177.2 (4)
C16—C15—C18—F644.5 (7)C22—C21—S2—C200.0 (4)
C14—C15—C18—F5101.7 (6)N6—C21—S2—C20−177.4 (4)
C16—C15—C18—F5−76.7 (6)N5—C20—S2—C21−0.3 (4)
C14—C15—C18—F4−15.3 (7)N4—C20—S2—C21179.0 (4)
D—H···AD—HH···AD···AD—H···A
N1—H1···N5i0.862.323.044 (5)142
N1—H1···O3i0.862.573.023 (5)115
N4—H4···N2ii0.862.182.939 (5)147
N4—H4···O20.862.623.146 (5)121
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
N1—H1⋯N5i 0.862.323.044 (5)142
N1—H1⋯O3i 0.862.573.023 (5)115
N4—H4⋯N2ii 0.862.182.939 (5)147
N4—H4⋯O20.862.623.146 (5)121

Symmetry codes: (i) ; (ii) .

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