Literature DB >> 26594578

Crystal structure of 2-fluoro-N-(1,3-thia-zol-2-yl)benzamide.

Rodolfo Moreno-Fuquen1, Juan C Castillo2, Diana Becerra1, Hernando Camargo3, José A Henao4.   

Abstract

In the title compound, C10H7FN2OS, the mean plane of the central amide fragment (r.m.s. deviation = 0.048 Å) makes dihedral angles of 35.28 (8) and 10.14 (12)° with those of the fluoro-benzene and thia-zole rings, respectively. The thia-zole S and amide O atoms lie to the same side of the mol-ecule. In the crystal, pairs of N-H⋯N hydrogen bonds connect the mol-ecules into inversion dimers with R 2 (2)(8) motifs, and weak C-H⋯O inter-actions connect the mol-ecules into C(6) [001] chains. Together, the N-H⋯N and C-H⋯O hydrogen bonds generate (100) sheets.

Entities:  

Keywords:  1,3-thia­zole; benzamide; cancer cell-growth inhibitors; carboxamides; crystal structure; hydrogen bonding; thia­zole derivatives

Year:  2015        PMID: 26594578      PMCID: PMC4645012          DOI: 10.1107/S2056989015019192

Source DB:  PubMed          Journal:  Acta Crystallogr E Crystallogr Commun


Related literature

For thia­zole derivatives as inhibitors for cancer cell growth, see: Schade et al. (2008 ▸). For carboxamides with synthetic and biological inter­est, see: Moreno-Fuquen et al. (2014a ▸,b ▸). For related structures, see: Zonouzi et al. (2009 ▸); Saeed et al. (2010 ▸).

Experimental

Crystal data

C10H7FN2OS M = 222.24 Monoclinic, a = 12.2171 (8) Å b = 5.0741 (3) Å c = 15.7078 (10) Å β = 98.820 (6)° V = 962.22 (11) Å3 Z = 4 Mo Kα radiation μ = 0.32 mm−1 T = 295 K 0.40 × 0.17 × 0.08 mm

Data collection

Rigaku Pilatus 200K diffractometer Absorption correction: multi-scan CrystalClear; Rigaku, 2008 ▸ T min = 0.701, T max = 1.000 8722 measured reflections 2169 independent reflections 1556 reflections with I > 2σ(I) R int = 0.060

Refinement

R[F 2 > 2σ(F 2)] = 0.046 wR(F 2) = 0.098 S = 0.89 2169 reflections 136 parameters H-atom parameters constrained Δρmax = 0.22 e Å−3 Δρmin = −0.30 e Å−3

Data collection: CrystalClear (Rigaku, 2008 ▸); cell refinement: CrystalClear; data reduction: CrystalClear; program(s) used to solve structure: SHELXS2014 (Sheldrick, 2008 ▸); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2015 ▸); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▸) and Mercury (Macrae et al., 2006 ▸); software used to prepare material for publication: WinGX (Farrugia, 2012 ▸). Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S2056989015019192/hb7520sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S2056989015019192/hb7520Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S2056989015019192/hb7520Isup3.cml Click here for additional data file. . DOI: 10.1107/S2056989015019192/hb7520fig1.tif The mol­ecular structure of (I) with displacement ellipsoids drawn at the 50% probability level. Click here for additional data file. x y z . DOI: 10.1107/S2056989015019192/hb7520fig2.tif Part of the crystal structure of (I), showing the formation of hydrogen-bonded C(13) chains parallel to [31] [Symmetry code: (i) −x − , y − , −z + ]. CCDC reference: 1430605 Additional supporting information: crystallographic information; 3D view; checkCIF report
C10H7FN2OSDx = 1.534 Mg m3
Mr = 222.24Melting point: 443(1) K
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
a = 12.2171 (8) ÅCell parameters from 8732 reflections
b = 5.0741 (3) Åθ = 3.3–27.5°
c = 15.7078 (10) ŵ = 0.32 mm1
β = 98.820 (6)°T = 295 K
V = 962.22 (11) Å3Plate, colourless
Z = 40.40 × 0.17 × 0.08 mm
F(000) = 456
Rigaku Pilatus 200K diffractometer2169 independent reflections
Radiation source: Sealed tube_Mo1556 reflections with I > 2σ(I)
Graphite Monochromator monochromatorRint = 0.060
profile data from ω–scansθmax = 27.5°, θmin = 3.3°
Absorption correction: multi-scan CrystalClear; Rigaku, 2008h = −15→15
Tmin = 0.701, Tmax = 1.000k = −6→6
8722 measured reflectionsl = −20→20
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.098H-atom parameters constrained
S = 0.89w = 1/[σ2(Fo2) + (0.0481P)2] where P = (Fo2 + 2Fc2)/3
2169 reflections(Δ/σ)max < 0.001
136 parametersΔρmax = 0.22 e Å3
0 restraintsΔρmin = −0.30 e Å3
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S10.18106 (4)0.17354 (10)0.85154 (3)0.04570 (16)
F10.21170 (8)0.5331 (2)1.16166 (6)0.0518 (3)
C10.30360 (13)0.7730 (4)1.06395 (10)0.0358 (4)
O10.31999 (9)0.5432 (3)0.93486 (8)0.0496 (3)
C80.11054 (13)0.3206 (3)0.92625 (10)0.0343 (4)
N10.15631 (11)0.5105 (3)0.98371 (9)0.0383 (3)
H10.11560.57581.01850.046*
C30.32638 (15)0.8821 (4)1.21586 (12)0.0479 (5)
H30.30930.84921.27060.057*
N20.01031 (11)0.2339 (3)0.92704 (9)0.0398 (3)
C20.28064 (13)0.7317 (4)1.14663 (11)0.0380 (4)
C50.42365 (16)1.1283 (4)1.12149 (14)0.0533 (5)
H50.47221.26351.11290.064*
C9−0.01271 (15)0.0323 (4)0.86792 (11)0.0432 (4)
H9−0.0799−0.05720.86040.052*
C70.26161 (13)0.6006 (4)0.98871 (10)0.0362 (4)
C100.06810 (15)−0.0259 (4)0.82218 (11)0.0466 (5)
H100.0636−0.15650.78020.056*
C60.37735 (14)0.9737 (4)1.05305 (12)0.0442 (4)
H60.39591.00450.99870.053*
C40.39778 (16)1.0819 (4)1.20273 (14)0.0549 (5)
H40.42891.18641.24880.066*
U11U22U33U12U13U23
S10.0485 (3)0.0515 (3)0.0392 (3)0.0029 (2)0.01349 (19)−0.0103 (2)
F10.0561 (6)0.0604 (8)0.0405 (6)−0.0113 (6)0.0126 (5)0.0059 (5)
C10.0343 (8)0.0378 (9)0.0358 (9)0.0023 (8)0.0067 (6)−0.0007 (7)
O10.0485 (7)0.0616 (9)0.0425 (7)−0.0039 (7)0.0198 (6)−0.0084 (6)
C80.0403 (9)0.0355 (9)0.0279 (8)0.0032 (7)0.0077 (6)0.0002 (7)
N10.0380 (7)0.0433 (9)0.0351 (7)−0.0017 (7)0.0109 (6)−0.0090 (6)
C30.0443 (9)0.0626 (13)0.0361 (9)0.0066 (9)0.0042 (7)−0.0049 (9)
N20.0415 (8)0.0404 (8)0.0385 (8)−0.0017 (7)0.0097 (6)−0.0049 (7)
C20.0345 (8)0.0425 (10)0.0375 (9)0.0023 (8)0.0065 (6)0.0019 (8)
C50.0442 (10)0.0454 (12)0.0687 (14)−0.0062 (9)0.0037 (9)−0.0016 (10)
C90.0482 (10)0.0382 (10)0.0421 (10)−0.0024 (9)0.0037 (8)−0.0026 (8)
C70.0392 (8)0.0370 (10)0.0335 (9)0.0012 (8)0.0088 (7)0.0014 (7)
C100.0588 (11)0.0410 (11)0.0392 (10)0.0036 (9)0.0047 (8)−0.0094 (8)
C60.0401 (9)0.0467 (11)0.0470 (10)−0.0022 (8)0.0105 (8)0.0036 (9)
C40.0489 (10)0.0569 (13)0.0551 (12)0.0012 (10)−0.0045 (9)−0.0170 (11)
S1—C101.716 (2)C3—C21.375 (2)
S1—C81.7280 (16)C3—H30.9300
F1—C21.357 (2)N2—C91.381 (2)
C1—C21.386 (2)C5—C61.380 (3)
C1—C61.388 (2)C5—C41.381 (3)
C1—C71.496 (2)C5—H50.9300
O1—C71.2223 (18)C9—C101.340 (2)
C8—N21.303 (2)C9—H90.9300
C8—N11.379 (2)C10—H100.9300
N1—C71.356 (2)C6—H60.9300
N1—H10.8600C4—H40.9300
C3—C41.373 (3)
C10—S1—C888.45 (8)C6—C5—H5120.1
C2—C1—C6117.07 (16)C4—C5—H5120.1
C2—C1—C7123.89 (16)C10—C9—N2115.65 (16)
C6—C1—C7118.82 (15)C10—C9—H9122.2
N2—C8—N1121.13 (14)N2—C9—H9122.2
N2—C8—S1115.33 (13)O1—C7—N1121.90 (16)
N1—C8—S1123.50 (12)O1—C7—C1121.34 (15)
C7—N1—C8124.02 (14)N1—C7—C1116.75 (14)
C7—N1—H1118.0C9—C10—S1110.75 (14)
C8—N1—H1118.0C9—C10—H10124.6
C4—C3—C2118.77 (18)S1—C10—H10124.6
C4—C3—H3120.6C5—C6—C1121.16 (18)
C2—C3—H3120.6C5—C6—H6119.4
C8—N2—C9109.78 (14)C1—C6—H6119.4
F1—C2—C3117.53 (15)C3—C4—C5120.35 (18)
F1—C2—C1119.71 (15)C3—C4—H4119.8
C3—C2—C1122.75 (17)C5—C4—H4119.8
C6—C5—C4119.88 (19)
C10—S1—C8—N2−1.98 (14)C8—N1—C7—O19.4 (3)
C10—S1—C8—N1175.93 (15)C8—N1—C7—C1−170.15 (15)
N2—C8—N1—C7177.02 (16)C2—C1—C7—O1−140.34 (18)
S1—C8—N1—C7−0.8 (2)C6—C1—C7—O134.1 (3)
N1—C8—N2—C9−175.59 (15)C2—C1—C7—N139.2 (2)
S1—C8—N2—C92.38 (19)C6—C1—C7—N1−146.37 (16)
C4—C3—C2—F1179.02 (16)N2—C9—C10—S10.2 (2)
C4—C3—C2—C10.0 (3)C8—S1—C10—C90.94 (14)
C6—C1—C2—F1−178.05 (14)C4—C5—C6—C10.8 (3)
C7—C1—C2—F1−3.6 (3)C2—C1—C6—C5−1.3 (3)
C6—C1—C2—C30.9 (3)C7—C1—C6—C5−176.13 (16)
C7—C1—C2—C3175.41 (16)C2—C3—C4—C5−0.6 (3)
C8—N2—C9—C10−1.6 (2)C6—C5—C4—C30.2 (3)
D—H···AD—HH···AD···AD—H···A
N1—H1···N2i0.862.112.944 (2)165
C3—H3···O1ii0.932.623.474 (2)153
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N1H1N2i 0.862.112.944(2)165
C3H3O1ii 0.932.623.474(2)153

Symmetry codes: (i) ; (ii) .

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