Literature DB >> 25553024

Crystal structure of (E)-4-{[2-(2,4-di-nitro-phen-yl)hydrazin-1-yl-idene]meth-yl}-3-methyl-1-phenyl-5-(1H-pyrrol-1-yl)-1H-pyrazole.

Joel T Mague1, Shaaban K Mohamed2, Mehmet Akkurt3, Hussein M S El-Kashef4, Mustafa R Albayati5.   

Abstract

The title compound, C21H17N7O4, is in an 'extended' conformation aided by an intra-molecular N-H⋯O hydrogen bond. The pyrazole ring makes dihedral angles of 29.17 (6), 65.47 (4) and 9.91 (7)°, respectively, with the phenyl, pyrrole and benzene rings. In the crystal, mol-ecules are connected by pairs of N-H⋯O and C-H⋯O hydrogen bonds, forming inversion dimers which associate into ribbons running along the b axis through complementary C-H⋯O inter-actions.

Entities:  

Keywords:  azo­pyrazole; crystal structure; hydrogen bonding; pyrazole

Year:  2014        PMID: 25553024      PMCID: PMC4257438          DOI: 10.1107/S1600536814024039

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the use of pyrazole compounds as building blocks of various heterocyclic compounds, see: Abramov et al. (2001 ▶); Quiroga et al. (2001 ▶); Wu et al. (2006 ▶); El-Emary (2006 ▶); Rangnekar & Dhamnaskar (1988 ▶). For the bioactivity of pyrazole-containing compounds, see: Mashevskaya et al. (2001 ▶); Janus et al. (1999 ▶); Park et al. (2005 ▶); Bouabdallah et al. (2006 ▶); Yıldırım et al. (2005 ▶); Bailey et al. (1985 ▶); Chu & Cutler (1986 ▶). For industrial applications of azo­pyrazole derivatives, see: Karci & Demircah (2006 ▶); Vicentini et al. (1998 ▶).

Experimental

Crystal data

C21H17N7O4 M = 431.42 Monoclinic, a = 5.7955 (1) Å b = 15.4472 (4) Å c = 21.9289 (5) Å β = 93.831 (1)° V = 1958.78 (8) Å3 Z = 4 Cu Kα radiation μ = 0.88 mm−1 T = 150 K 0.17 × 0.10 × 0.09 mm

Data collection

Bruker D8 VENTURE PHOTON 100 CMOS diffractometer Absorption correction: numerical (SADABS; Bruker, 2014 ▶) T min = 0.89, T max = 0.93 30722 measured reflections 3854 independent reflections 3425 reflections with I > 2σ(I) R int = 0.034

Refinement

R[F 2 > 2σ(F 2)] = 0.033 wR(F 2) = 0.089 S = 1.03 3854 reflections 290 parameters H-atom parameters constrained Δρmax = 0.20 e Å−3 Δρmin = −0.27 e Å−3

Data collection: APEX2 (Bruker, 2014 ▶); cell refinement: SAINT (Bruker, 2014 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXT (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL2014 (Sheldrick, 2008 ▶); molecular graphics: DIAMOND (Brandenburg & Putz, 2012 ▶); software used to prepare material for publication: SHELXTL (Sheldrick, 2008 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814024039/is5380sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814024039/is5380Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814024039/is5380Isup3.cml Click here for additional data file. . DOI: 10.1107/S1600536814024039/is5380fig1.tif Numbering scheme for the title mol­ecule. Ellipsoids are drawn at the 50% probability level. Click here for additional data file. c . DOI: 10.1107/S1600536814024039/is5380fig2.tif Packing diagram looking down the c axis showing two chains formed by complementary N—H⋯O and C—H⋯O inter­actions and their association through additional C—H⋯O inter­actions. Click here for additional data file. a . DOI: 10.1107/S1600536814024039/is5380fig3.tif Packing diagram viewed down the a axis showing an edge view of several ribbons. CCDC reference: 1031959 Additional supporting information: crystallographic information; 3D view; checkCIF report
C21H17N7O4F(000) = 896
Mr = 431.42Dx = 1.463 Mg m3
Monoclinic, P21/nCu Kα radiation, λ = 1.54178 Å
a = 5.7955 (1) ÅCell parameters from 9846 reflections
b = 15.4472 (4) Åθ = 6.3–72.1°
c = 21.9289 (5) ŵ = 0.88 mm1
β = 93.831 (1)°T = 150 K
V = 1958.78 (8) Å3Column, red-orange
Z = 40.17 × 0.10 × 0.09 mm
Bruker D8 VENTURE PHOTON 100 CMOS diffractometer3854 independent reflections
Radiation source: INCOATEC IµS micro–focus source3425 reflections with I > 2σ(I)
Mirror monochromatorRint = 0.034
Detector resolution: 10.4167 pixels mm-1θmax = 72.1°, θmin = 3.5°
ω scansh = −7→6
Absorption correction: numerical (SADABS; Bruker, 2014)k = −19→19
Tmin = 0.89, Tmax = 0.93l = −26→26
30722 measured reflections
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.033Hydrogen site location: mixed
wR(F2) = 0.089H-atom parameters constrained
S = 1.03w = 1/[σ2(Fo2) + (0.0466P)2 + 0.6128P] where P = (Fo2 + 2Fc2)/3
3854 reflections(Δ/σ)max < 0.001
290 parametersΔρmax = 0.20 e Å3
0 restraintsΔρmin = −0.27 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. H-atoms attached to carbon were placed in calculated positions (C—H = 0.95 - 0.98 Å) while that attached to nitrogen was placed in a location derived from a difference map and its parameters adjusted to give N—H = 0.91 Å. All were included as riding contributions with isotropic displacement parameters 1.2 - 1.5 times those of the attached atoms.
xyzUiso*/Ueq
O1−0.33378 (17)0.99482 (6)0.45404 (5)0.0375 (2)
O2−0.58503 (18)0.90272 (7)0.41597 (5)0.0501 (3)
O3−0.49349 (16)0.60444 (6)0.45127 (4)0.0358 (2)
O4−0.18232 (15)0.54965 (6)0.49537 (4)0.0332 (2)
N10.97263 (17)0.60556 (6)0.70725 (5)0.0242 (2)
N20.94167 (18)0.69340 (6)0.70316 (5)0.0269 (2)
N30.80335 (16)0.47264 (6)0.66558 (4)0.0232 (2)
N40.33730 (17)0.67100 (7)0.58210 (5)0.0256 (2)
N50.14465 (17)0.64891 (6)0.54543 (5)0.0258 (2)
H5A0.11130.59250.53500.031*
N6−0.40360 (19)0.92045 (7)0.44522 (5)0.0327 (3)
N7−0.30076 (17)0.61280 (7)0.47743 (5)0.0260 (2)
C11.14907 (19)0.57328 (8)0.75003 (5)0.0241 (2)
C21.3424 (2)0.62502 (8)0.76363 (6)0.0276 (3)
H21.35690.67940.74400.033*
C31.5137 (2)0.59637 (8)0.80620 (6)0.0304 (3)
H31.64550.63150.81590.036*
C41.4935 (2)0.51679 (9)0.83452 (6)0.0312 (3)
H41.61190.49710.86320.037*
C51.3000 (2)0.46609 (9)0.82076 (6)0.0312 (3)
H51.28660.41150.84020.037*
C61.1250 (2)0.49398 (8)0.77893 (6)0.0276 (3)
H60.99120.45940.77020.033*
C70.81077 (19)0.56305 (8)0.67051 (5)0.0226 (2)
C80.6671 (2)0.62469 (7)0.64242 (5)0.0230 (2)
C90.7576 (2)0.70498 (8)0.66482 (5)0.0249 (2)
C100.6691 (2)0.79431 (8)0.65187 (6)0.0316 (3)
H10A0.77260.83650.67290.047*
H10B0.51360.80000.66640.047*
H10C0.66300.80500.60770.047*
C110.9756 (2)0.42083 (8)0.64524 (6)0.0304 (3)
H111.11190.44040.62770.036*
C120.9170 (3)0.33692 (9)0.65452 (6)0.0365 (3)
H121.00420.28740.64450.044*
C130.7022 (2)0.33657 (9)0.68190 (6)0.0348 (3)
H130.61940.28680.69360.042*
C140.6360 (2)0.42042 (8)0.68838 (6)0.0284 (3)
H140.49880.43960.70560.034*
C150.4654 (2)0.60777 (8)0.60170 (5)0.0236 (2)
H150.42790.55020.58950.028*
C160.0083 (2)0.71292 (8)0.52114 (5)0.0247 (2)
C170.0773 (2)0.80070 (8)0.52864 (6)0.0304 (3)
H170.21870.81360.55120.037*
C18−0.0544 (2)0.86720 (8)0.50421 (6)0.0320 (3)
H18−0.00380.92540.50960.038*
C19−0.2638 (2)0.84940 (8)0.47125 (6)0.0285 (3)
C20−0.3414 (2)0.76630 (8)0.46297 (5)0.0269 (3)
H20−0.48470.75510.44080.032*
C21−0.2072 (2)0.69842 (7)0.48756 (5)0.0241 (2)
U11U22U33U12U13U23
O10.0399 (5)0.0267 (5)0.0456 (6)0.0029 (4)0.0011 (4)0.0057 (4)
O20.0423 (6)0.0412 (6)0.0629 (7)0.0049 (5)−0.0245 (5)0.0074 (5)
O30.0296 (5)0.0349 (5)0.0410 (5)−0.0028 (4)−0.0129 (4)−0.0048 (4)
O40.0302 (5)0.0241 (5)0.0442 (5)0.0018 (4)−0.0058 (4)−0.0011 (4)
N10.0234 (5)0.0212 (5)0.0272 (5)0.0005 (4)−0.0034 (4)−0.0015 (4)
N20.0285 (5)0.0212 (5)0.0305 (5)0.0007 (4)−0.0028 (4)−0.0014 (4)
N30.0242 (5)0.0210 (5)0.0240 (5)0.0003 (4)−0.0023 (4)−0.0007 (4)
N40.0224 (5)0.0259 (5)0.0276 (5)0.0003 (4)−0.0039 (4)−0.0006 (4)
N50.0237 (5)0.0232 (5)0.0297 (5)−0.0004 (4)−0.0052 (4)−0.0014 (4)
N60.0317 (6)0.0313 (6)0.0343 (6)0.0039 (5)−0.0024 (5)0.0050 (4)
N70.0252 (5)0.0278 (5)0.0248 (5)0.0003 (4)−0.0012 (4)−0.0024 (4)
C10.0217 (5)0.0265 (6)0.0237 (6)0.0024 (5)−0.0016 (4)−0.0029 (5)
C20.0267 (6)0.0250 (6)0.0306 (6)−0.0015 (5)−0.0011 (5)−0.0014 (5)
C30.0241 (6)0.0318 (7)0.0343 (7)−0.0025 (5)−0.0050 (5)−0.0052 (5)
C40.0273 (6)0.0343 (7)0.0308 (6)0.0015 (5)−0.0075 (5)−0.0015 (5)
C50.0320 (7)0.0303 (6)0.0304 (6)−0.0020 (5)−0.0041 (5)0.0044 (5)
C60.0241 (6)0.0300 (6)0.0282 (6)−0.0042 (5)−0.0024 (5)0.0011 (5)
C70.0219 (5)0.0229 (6)0.0228 (6)−0.0005 (4)−0.0006 (4)−0.0016 (4)
C80.0232 (6)0.0229 (6)0.0229 (6)0.0006 (4)0.0008 (4)−0.0002 (4)
C90.0251 (6)0.0240 (6)0.0255 (6)0.0004 (5)0.0003 (4)−0.0010 (4)
C100.0351 (7)0.0226 (6)0.0359 (7)0.0012 (5)−0.0053 (5)−0.0012 (5)
C110.0312 (6)0.0287 (6)0.0317 (6)0.0048 (5)0.0047 (5)−0.0013 (5)
C120.0490 (8)0.0243 (6)0.0362 (7)0.0084 (6)0.0033 (6)−0.0006 (5)
C130.0465 (8)0.0247 (6)0.0329 (7)−0.0059 (6)−0.0009 (6)0.0029 (5)
C140.0271 (6)0.0295 (6)0.0281 (6)−0.0031 (5)−0.0009 (5)0.0007 (5)
C150.0244 (6)0.0215 (6)0.0246 (6)−0.0010 (4)−0.0001 (4)−0.0004 (4)
C160.0232 (6)0.0257 (6)0.0251 (6)0.0015 (5)0.0002 (4)0.0011 (4)
C170.0264 (6)0.0268 (6)0.0371 (7)−0.0019 (5)−0.0059 (5)0.0011 (5)
C180.0306 (7)0.0250 (6)0.0396 (7)−0.0020 (5)−0.0033 (5)0.0027 (5)
C190.0273 (6)0.0280 (6)0.0299 (6)0.0040 (5)−0.0014 (5)0.0045 (5)
C200.0243 (6)0.0310 (6)0.0251 (6)0.0019 (5)−0.0018 (4)0.0001 (5)
C210.0241 (6)0.0244 (6)0.0235 (6)−0.0011 (5)0.0002 (4)−0.0012 (4)
O1—N61.2291 (15)C5—H50.9500
O2—N61.2255 (15)C6—H60.9500
O3—N71.2279 (13)C7—C81.3822 (16)
O4—N71.2416 (13)C8—C91.4213 (16)
N1—C71.3636 (15)C8—C151.4469 (16)
N1—N21.3708 (14)C9—C101.4928 (16)
N1—C11.4305 (14)C10—H10A0.9800
N2—C91.3254 (15)C10—H10B0.9800
N3—C111.3769 (16)C10—H10C0.9800
N3—C141.3806 (16)C11—C121.3589 (19)
N3—C71.4012 (15)C11—H110.9500
N4—C151.2834 (16)C12—C131.418 (2)
N4—N51.3747 (14)C12—H120.9500
N5—C161.3527 (15)C13—C141.3609 (19)
N5—H5A0.9184C13—H130.9500
N6—C191.4579 (16)C14—H140.9500
N7—C211.4410 (15)C15—H150.9500
C1—C61.3906 (17)C16—C171.4201 (17)
C1—C21.3921 (17)C16—C211.4246 (16)
C2—C31.3891 (17)C17—C181.3677 (18)
C2—H20.9500C17—H170.9500
C3—C41.3858 (19)C18—C191.3973 (18)
C3—H30.9500C18—H180.9500
C4—C51.3847 (18)C19—C201.3683 (18)
C4—H40.9500C20—C211.3924 (17)
C5—C61.3898 (17)C20—H200.9500
C7—N1—N2110.87 (9)N2—C9—C10119.82 (11)
C7—N1—C1130.77 (10)C8—C9—C10128.81 (11)
N2—N1—C1118.20 (9)C9—C10—H10A109.5
C9—N2—N1105.75 (9)C9—C10—H10B109.5
C11—N3—C14108.66 (10)H10A—C10—H10B109.5
C11—N3—C7125.81 (10)C9—C10—H10C109.5
C14—N3—C7124.97 (10)H10A—C10—H10C109.5
C15—N4—N5115.85 (10)H10B—C10—H10C109.5
C16—N5—N4118.63 (10)C12—C11—N3108.17 (12)
C16—N5—H5A119.2C12—C11—H11125.9
N4—N5—H5A122.1N3—C11—H11125.9
O2—N6—O1123.59 (11)C11—C12—C13107.61 (12)
O2—N6—C19118.15 (11)C11—C12—H12126.2
O1—N6—C19118.26 (11)C13—C12—H12126.2
O3—N7—O4122.13 (10)C14—C13—C12107.58 (12)
O3—N7—C21119.32 (10)C14—C13—H13126.2
O4—N7—C21118.55 (9)C12—C13—H13126.2
C6—C1—C2120.80 (11)C13—C14—N3107.98 (11)
C6—C1—N1121.12 (11)C13—C14—H14126.0
C2—C1—N1118.04 (11)N3—C14—H14126.0
C3—C2—C1119.34 (12)N4—C15—C8119.65 (11)
C3—C2—H2120.3N4—C15—H15120.2
C1—C2—H2120.3C8—C15—H15120.2
C4—C3—C2120.38 (12)N5—C16—C17119.99 (11)
C4—C3—H3119.8N5—C16—C21123.88 (11)
C2—C3—H3119.8C17—C16—C21116.13 (11)
C5—C4—C3119.70 (12)C18—C17—C16121.76 (12)
C5—C4—H4120.1C18—C17—H17119.1
C3—C4—H4120.1C16—C17—H17119.1
C4—C5—C6120.88 (12)C17—C18—C19119.82 (12)
C4—C5—H5119.6C17—C18—H18120.1
C6—C5—H5119.6C19—C18—H18120.1
C5—C6—C1118.87 (11)C20—C19—C18121.32 (11)
C5—C6—H6120.6C20—C19—N6119.01 (11)
C1—C6—H6120.6C18—C19—N6119.67 (11)
N1—C7—C8107.55 (10)C19—C20—C21118.99 (11)
N1—C7—N3122.82 (10)C19—C20—H20120.5
C8—C7—N3129.63 (10)C21—C20—H20120.5
C7—C8—C9104.47 (10)C20—C21—C16121.97 (11)
C7—C8—C15126.04 (11)C20—C21—N7115.90 (10)
C9—C8—C15129.44 (11)C16—C21—N7122.13 (10)
N2—C9—C8111.35 (10)
C7—N1—N2—C91.25 (13)C14—N3—C11—C120.56 (14)
C1—N1—N2—C9−174.68 (10)C7—N3—C11—C12172.24 (11)
C15—N4—N5—C16−177.12 (11)N3—C11—C12—C13−0.41 (15)
C7—N1—C1—C6−26.82 (18)C11—C12—C13—C140.11 (16)
N2—N1—C1—C6148.16 (11)C12—C13—C14—N30.22 (15)
C7—N1—C1—C2155.46 (12)C11—N3—C14—C13−0.48 (14)
N2—N1—C1—C2−29.57 (15)C7—N3—C14—C13−172.26 (11)
C6—C1—C2—C30.61 (18)N5—N4—C15—C8−177.73 (10)
N1—C1—C2—C3178.34 (11)C7—C8—C15—N4175.05 (11)
C1—C2—C3—C40.50 (19)C9—C8—C15—N4−1.91 (19)
C2—C3—C4—C5−0.8 (2)N4—N5—C16—C176.28 (17)
C3—C4—C5—C6−0.1 (2)N4—N5—C16—C21−173.53 (11)
C4—C5—C6—C11.2 (2)N5—C16—C17—C18179.26 (12)
C2—C1—C6—C5−1.45 (19)C21—C16—C17—C18−0.92 (19)
N1—C1—C6—C5−179.11 (11)C16—C17—C18—C190.5 (2)
N2—N1—C7—C8−1.12 (13)C17—C18—C19—C200.3 (2)
C1—N1—C7—C8174.14 (11)C17—C18—C19—N6−179.94 (12)
N2—N1—C7—N3179.54 (10)O2—N6—C19—C20−1.03 (18)
C1—N1—C7—N3−5.19 (19)O1—N6—C19—C20178.62 (12)
C11—N3—C7—N1−60.95 (16)O2—N6—C19—C18179.19 (13)
C14—N3—C7—N1109.43 (13)O1—N6—C19—C18−1.16 (18)
C11—N3—C7—C8119.87 (14)C18—C19—C20—C21−0.56 (19)
C14—N3—C7—C8−69.75 (17)N6—C19—C20—C21179.67 (11)
N1—C7—C8—C90.52 (12)C19—C20—C21—C160.08 (18)
N3—C7—C8—C9179.80 (11)C19—C20—C21—N7179.52 (11)
N1—C7—C8—C15−177.05 (11)N5—C16—C21—C20−179.55 (11)
N3—C7—C8—C152.2 (2)C17—C16—C21—C200.64 (17)
N1—N2—C9—C8−0.90 (13)N5—C16—C21—N71.04 (18)
N1—N2—C9—C10177.49 (11)C17—C16—C21—N7−178.78 (11)
C7—C8—C9—N20.25 (13)O3—N7—C21—C20−3.71 (16)
C15—C8—C9—N2177.71 (11)O4—N7—C21—C20176.00 (11)
C7—C8—C9—C10−177.97 (12)O3—N7—C21—C16175.74 (11)
C15—C8—C9—C10−0.5 (2)O4—N7—C21—C16−4.56 (16)
D—H···AD—HH···AD···AD—H···A
N5—H5A···O40.921.972.6208 (13)126
N5—H5A···O4i0.922.343.2065 (13)158
C15—H15···O3i0.952.593.4853 (15)158
C18—H18···O1ii0.952.403.1887 (16)140
Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
N5H5AO40.921.972.6208(13)126
N5H5AO4i 0.922.343.2065(13)158
C15H15O3i 0.952.593.4853(15)158
C18H18O1ii 0.952.403.1887(16)140

Symmetry codes: (i) ; (ii) .

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Authors:  Hyun-Ja Park; Kyung Lee; Su-Jin Park; Bangle Ahn; Jong-Cheol Lee; Heeyeong Cho; Kee-In Lee
Journal:  Bioorg Med Chem Lett       Date:  2005-07-01       Impact factor: 2.823

4.  Synthesis and biological evaluation of a series of substituted pyrazolo[3,4-d]-1,2,3-triazoles and pyrazolo[3,4-d]oxazoles.

Authors:  C B Vicentini; S Manfredini; M Manfrini; R Bazzanini; C Musiu; M Putzolu; G Perra; M E Marongiu
Journal:  Arch Pharm (Weinheim)       Date:  1998-09       Impact factor: 3.751

5.  3,4-Diphenyl-1H-pyrazole-1-propanamine antidepressants.

Authors:  D M Bailey; P E Hansen; A G Hlavac; E R Baizman; J Pearl; A F DeFelice; M E Feigenson
Journal:  J Med Chem       Date:  1985-02       Impact factor: 7.446

  5 in total
  1 in total

1.  Crystal structure and computational studies of (3Z)-4-benzoyl-3-[(2,4-di-nitro-phen-yl)hydrazinyl-idene]-5-phenyl-furan-2(3H)-one.

Authors:  Yavuz Köysal; Hakan Bülbül; İlhan Özer İlhan; Nazenin Akın; Necmi Dege
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2016-11-29
  1 in total

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