| Literature DB >> 25552992 |
N Swarna Sowmya1, S Sampathkrishnan1, S Sudhahar2, G Chakkaravarthi3, R Mohan Kumar2.
Abstract
In the title mol-ecular salt, C5H12N(+)·C6H4NO3 (-), the piperidine ring adopts a chair conformation and the cation is protonated at the N atom. In the anion, the nitro group is twisted at an angle of 10.30 (11)° with respect to the attached benzene ring. In the crystal, N-H⋯O hydrogen bonds link adjacent anions and cations into infinite chains propagating along [100]. The chains are linked by C-H⋯π inter-actions, forming sheets lying parallel to (001).Entities:
Keywords: 4-nitrophenol; C—H⋯π interactions; crystal structure; hydrogen bonding; molecular salt; piperidinium
Year: 2014 PMID: 25552992 PMCID: PMC4257431 DOI: 10.1107/S1600536814025306
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1The molecular structure of the title salt, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.
Hydrogen-bond geometry (, )
Cg1 is the centroid of the C1C6 ring.
|
|
| H |
|
|
|---|---|---|---|---|
| N2H2 | 0.90 | 1.92 | 2.788(2) | 161 |
| N2H2 | 0.90 | 1.80 | 2.6985(15) | 175 |
| C6H6 | 0.93 | 2.75 | 3.428(3) | 130 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 2The crystal packing of the title salt, viewed along the b axis. Hydrogen bonds are shown as dashed lines (see Table 1 ▶ for details; H atoms not involved in hydrogen bonding have been omitted for clarity).
Experimental details
| Crystal data | |
| Chemical formula | C5H12N+C6H4NO3 |
|
| 224.26 |
| Crystal system, space group | Orthorhombic, |
| Temperature (K) | 295 |
|
| 6.867(5), 10.121(4), 16.497(6) |
|
| 1146.6(10) |
|
| 4 |
| Radiation type | Mo |
| (mm1) | 0.10 |
| Crystal size (mm) | 0.26 0.22 0.20 |
| Data collection | |
| Diffractometer | Bruker Kappa APEXII CCD |
| Absorption correction | Multi-scan ( |
|
| 0.976, 0.981 |
| No. of measured, independent and observed [ | 6505, 2908, 2612 |
|
| 0.017 |
| (sin /)max (1) | 0.673 |
| Refinement | |
|
| 0.035, 0.091, 1.04 |
| No. of reflections | 2908 |
| No. of parameters | 146 |
| H-atom treatment | H-atom parameters constrained |
| max, min (e 3) | 0.13, 0.16 |
Computer programs: APEX2 and SAINT (Bruker, 2004 ▶), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶).
| C5H12N+·C6H4NO3− | |
| Orthorhombic, | Mo |
| Hall symbol: P 2ac 2ab | Cell parameters from 658 reflections |
| θ = 2.4–28.6° | |
| µ = 0.10 mm−1 | |
| Block, colourless | |
| 0.26 × 0.22 × 0.20 mm |
| Bruker Kappa APEXII CCD diffractometer | 2908 independent reflections |
| Radiation source: fine-focus sealed tube | 2612 reflections with |
| Graphite monochromator | |
| ω and φ scan | θmax = 28.6°, θmin = 2.4° |
| Absorption correction: multi-scan ( | |
| 6505 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 2908 reflections | Δρmax = 0.13 e Å−3 |
| 146 parameters | Δρmin = −0.16 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.119 (6) |
| Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes. |
| Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger. |
| C1 | 0.08265 (18) | 0.22326 (12) | 0.09031 (7) | 0.0380 (3) | |
| C2 | 0.0102 (2) | 0.31257 (12) | 0.14583 (7) | 0.0404 (3) | |
| H2 | −0.0220 | 0.2848 | 0.1979 | 0.049* | |
| C3 | −0.0144 (2) | 0.44223 (12) | 0.12419 (7) | 0.0403 (3) | |
| H3 | −0.0638 | 0.5014 | 0.1621 | 0.048* | |
| C4 | 0.03355 (18) | 0.48874 (11) | 0.04556 (7) | 0.0373 (3) | |
| C5 | 0.1115 (2) | 0.39408 (13) | −0.00839 (8) | 0.0474 (3) | |
| H5 | 0.1491 | 0.4211 | −0.0600 | 0.057* | |
| C6 | 0.1336 (2) | 0.26352 (13) | 0.01258 (8) | 0.0465 (3) | |
| H6 | 0.1820 | 0.2029 | −0.0247 | 0.056* | |
| C8 | 0.6387 (2) | 0.21154 (17) | 0.33603 (10) | 0.0570 (4) | |
| H8A | 0.7057 | 0.2749 | 0.3702 | 0.068* | |
| H8B | 0.7348 | 0.1503 | 0.3149 | 0.068* | |
| C9 | 0.5422 (3) | 0.28329 (19) | 0.26652 (10) | 0.0626 (4) | |
| H9A | 0.6386 | 0.3342 | 0.2371 | 0.075* | |
| H9B | 0.4854 | 0.2197 | 0.2294 | 0.075* | |
| C10 | 0.3854 (3) | 0.37423 (16) | 0.29817 (10) | 0.0545 (4) | |
| H10A | 0.4442 | 0.4428 | 0.3312 | 0.065* | |
| H10B | 0.3199 | 0.4164 | 0.2530 | 0.065* | |
| C11 | 0.2391 (2) | 0.29893 (14) | 0.34801 (9) | 0.0480 (3) | |
| H11A | 0.1444 | 0.3601 | 0.3703 | 0.058* | |
| H11B | 0.1703 | 0.2370 | 0.3135 | 0.058* | |
| C12 | 0.4907 (2) | 0.13639 (13) | 0.38617 (9) | 0.0488 (3) | |
| H12A | 0.4341 | 0.0663 | 0.3537 | 0.059* | |
| H12B | 0.5549 | 0.0963 | 0.4324 | 0.059* | |
| N1 | 0.10251 (18) | 0.08685 (11) | 0.11247 (8) | 0.0487 (3) | |
| N2 | 0.33415 (17) | 0.22610 (10) | 0.41493 (6) | 0.0405 (3) | |
| H2A | 0.2438 | 0.1784 | 0.4415 | 0.049* | |
| H2B | 0.3851 | 0.2845 | 0.4502 | 0.049* | |
| O1 | 0.00554 (15) | 0.61052 (8) | 0.02564 (6) | 0.0458 (2) | |
| O2 | 0.1387 (2) | 0.00445 (11) | 0.06015 (8) | 0.0730 (4) | |
| O3 | 0.0795 (2) | 0.05548 (12) | 0.18390 (7) | 0.0771 (4) |
| C1 | 0.0355 (6) | 0.0359 (5) | 0.0427 (6) | 0.0007 (5) | −0.0004 (5) | 0.0057 (5) |
| C2 | 0.0423 (6) | 0.0453 (6) | 0.0337 (5) | −0.0013 (6) | −0.0019 (5) | 0.0049 (5) |
| C3 | 0.0434 (7) | 0.0414 (6) | 0.0361 (6) | 0.0028 (5) | 0.0005 (5) | −0.0033 (5) |
| C4 | 0.0324 (6) | 0.0364 (6) | 0.0431 (6) | −0.0006 (5) | 0.0018 (5) | 0.0030 (5) |
| C5 | 0.0545 (8) | 0.0445 (7) | 0.0432 (7) | 0.0065 (6) | 0.0179 (6) | 0.0089 (5) |
| C6 | 0.0517 (8) | 0.0412 (6) | 0.0466 (7) | 0.0096 (6) | 0.0155 (6) | 0.0019 (5) |
| C8 | 0.0425 (7) | 0.0574 (8) | 0.0710 (10) | 0.0055 (7) | 0.0071 (7) | −0.0019 (7) |
| C9 | 0.0635 (10) | 0.0723 (10) | 0.0520 (8) | −0.0044 (9) | 0.0162 (8) | 0.0073 (8) |
| C10 | 0.0568 (9) | 0.0489 (8) | 0.0577 (8) | −0.0017 (7) | −0.0023 (7) | 0.0146 (7) |
| C11 | 0.0388 (7) | 0.0459 (7) | 0.0594 (8) | 0.0031 (6) | −0.0029 (6) | 0.0053 (6) |
| C12 | 0.0495 (8) | 0.0408 (6) | 0.0559 (7) | 0.0053 (6) | −0.0015 (7) | 0.0016 (6) |
| N1 | 0.0516 (7) | 0.0396 (6) | 0.0547 (7) | −0.0015 (5) | 0.0013 (6) | 0.0090 (5) |
| N2 | 0.0433 (6) | 0.0377 (5) | 0.0406 (5) | −0.0053 (4) | 0.0014 (4) | −0.0029 (4) |
| O1 | 0.0494 (5) | 0.0346 (4) | 0.0535 (5) | 0.0023 (4) | 0.0079 (5) | 0.0061 (4) |
| O2 | 0.1004 (10) | 0.0403 (5) | 0.0782 (8) | 0.0118 (6) | 0.0251 (7) | 0.0021 (5) |
| O3 | 0.1256 (13) | 0.0504 (6) | 0.0554 (6) | −0.0028 (7) | −0.0012 (7) | 0.0188 (5) |
| C1—C2 | 1.3798 (18) | C9—C10 | 1.510 (2) |
| C1—C6 | 1.3902 (18) | C9—H9A | 0.9700 |
| C1—N1 | 1.4347 (17) | C9—H9B | 0.9700 |
| C2—C3 | 1.3703 (18) | C10—C11 | 1.506 (2) |
| C2—H2 | 0.9300 | C10—H10A | 0.9700 |
| C3—C4 | 1.4187 (17) | C10—H10B | 0.9700 |
| C3—H3 | 0.9300 | C11—N2 | 1.4793 (18) |
| C4—O1 | 1.2900 (15) | C11—H11A | 0.9700 |
| C4—C5 | 1.4129 (18) | C11—H11B | 0.9700 |
| C5—C6 | 1.374 (2) | C12—N2 | 1.4848 (19) |
| C5—H5 | 0.9300 | C12—H12A | 0.9700 |
| C6—H6 | 0.9300 | C12—H12B | 0.9700 |
| C8—C9 | 1.511 (2) | N1—O2 | 1.2257 (17) |
| C8—C12 | 1.516 (2) | N1—O3 | 1.2306 (16) |
| C8—H8A | 0.9700 | N2—H2A | 0.9000 |
| C8—H8B | 0.9700 | N2—H2B | 0.9000 |
| C2—C1—C6 | 120.73 (12) | H9A—C9—H9B | 108.2 |
| C2—C1—N1 | 119.70 (11) | C11—C10—C9 | 110.87 (13) |
| C6—C1—N1 | 119.55 (12) | C11—C10—H10A | 109.5 |
| C3—C2—C1 | 119.92 (11) | C9—C10—H10A | 109.5 |
| C3—C2—H2 | 120.0 | C11—C10—H10B | 109.5 |
| C1—C2—H2 | 120.0 | C9—C10—H10B | 109.5 |
| C2—C3—C4 | 121.83 (12) | H10A—C10—H10B | 108.1 |
| C2—C3—H3 | 119.1 | N2—C11—C10 | 111.42 (13) |
| C4—C3—H3 | 119.1 | N2—C11—H11A | 109.3 |
| O1—C4—C5 | 122.95 (11) | C10—C11—H11A | 109.3 |
| O1—C4—C3 | 121.02 (11) | N2—C11—H11B | 109.3 |
| C5—C4—C3 | 116.03 (11) | C10—C11—H11B | 109.3 |
| C6—C5—C4 | 122.36 (12) | H11A—C11—H11B | 108.0 |
| C6—C5—H5 | 118.8 | N2—C12—C8 | 110.68 (12) |
| C4—C5—H5 | 118.8 | N2—C12—H12A | 109.5 |
| C5—C6—C1 | 119.09 (12) | C8—C12—H12A | 109.5 |
| C5—C6—H6 | 120.5 | N2—C12—H12B | 109.5 |
| C1—C6—H6 | 120.5 | C8—C12—H12B | 109.5 |
| C9—C8—C12 | 111.16 (14) | H12A—C12—H12B | 108.1 |
| C9—C8—H8A | 109.4 | O2—N1—O3 | 121.66 (13) |
| C12—C8—H8A | 109.4 | O2—N1—C1 | 119.64 (12) |
| C9—C8—H8B | 109.4 | O3—N1—C1 | 118.70 (12) |
| C12—C8—H8B | 109.4 | C11—N2—C12 | 112.69 (11) |
| H8A—C8—H8B | 108.0 | C11—N2—H2A | 109.1 |
| C10—C9—C8 | 110.09 (13) | C12—N2—H2A | 109.1 |
| C10—C9—H9A | 109.6 | C11—N2—H2B | 109.1 |
| C8—C9—H9A | 109.6 | C12—N2—H2B | 109.1 |
| C10—C9—H9B | 109.6 | H2A—N2—H2B | 107.8 |
| C8—C9—H9B | 109.6 | ||
| C6—C1—C2—C3 | 0.8 (2) | C12—C8—C9—C10 | 56.35 (18) |
| N1—C1—C2—C3 | −178.12 (12) | C8—C9—C10—C11 | −56.27 (19) |
| C1—C2—C3—C4 | −0.2 (2) | C9—C10—C11—N2 | 55.67 (18) |
| C2—C3—C4—O1 | 178.45 (13) | C9—C8—C12—N2 | −55.31 (17) |
| C2—C3—C4—C5 | −1.21 (19) | C2—C1—N1—O2 | 169.09 (14) |
| O1—C4—C5—C6 | −177.44 (14) | C6—C1—N1—O2 | −9.8 (2) |
| C3—C4—C5—C6 | 2.2 (2) | C2—C1—N1—O3 | −9.8 (2) |
| C4—C5—C6—C1 | −1.8 (2) | C6—C1—N1—O3 | 171.33 (14) |
| C2—C1—C6—C5 | 0.2 (2) | C10—C11—N2—C12 | −55.30 (16) |
| N1—C1—C6—C5 | 179.09 (14) | C8—C12—N2—C11 | 54.81 (16) |
| H··· | ||||
| N2—H2 | 0.90 | 1.92 | 2.788 (2) | 161 |
| N2—H2 | 0.90 | 1.80 | 2.6985 (15) | 175 |
| C6—H6··· | 0.93 | 2.75 | 3.428 (3) | 130 |