Literature DB >> 25552992

Crystal structure of piperidinium 4-nitro-phenolate.

N Swarna Sowmya1, S Sampathkrishnan1, S Sudhahar2, G Chakkaravarthi3, R Mohan Kumar2.   

Abstract

In the title mol-ecular salt, C5H12N(+)·C6H4NO3 (-), the piperidine ring adopts a chair conformation and the cation is protonated at the N atom. In the anion, the nitro group is twisted at an angle of 10.30 (11)° with respect to the attached benzene ring. In the crystal, N-H⋯O hydrogen bonds link adjacent anions and cations into infinite chains propagating along [100]. The chains are linked by C-H⋯π inter-actions, forming sheets lying parallel to (001).

Entities:  

Keywords:  4-nitro­phenol; C—H⋯π inter­actions; crystal structure; hydrogen bonding; mol­ecular salt; piperidinium

Year:  2014        PMID: 25552992      PMCID: PMC4257431          DOI: 10.1107/S1600536814025306

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Chemical context

Piperidine derivatives exhibit a broad-spectrum of biological activities such as anti-bacterial and anti-cancer (Parthiban et al., 2005 ▶). Nitro-aromatics are widely used either as materials or as inter­mediates in explosives, dyestuffs, pesticides and organic synthesis (Yan et al., 2006 ▶). We report herein on the synthesis and crystal structure of the title mol­ecular salt, prepared by mixing piperidine with 4-nitro­phenol.

Structural commentary

The mol­ecular structure of the title compound is illustrated in Fig. 1 ▶. The geometric parameters are close to those reported for similar structures viz. 1-acetyl-c-3,t-3-dimethyl-r-2,c-6-di­phenyl­piperidin-4-one (Aravindhan et al., 2009 ▶), 4-nitro­phenol-piperazine (2/1) (Nagapandiselvi et al., 2013 ▶) and 2-carboxyl­atopyridinium-4-nitro­phenol (1/1) (Sankar et al., 2014 ▶). The piperidine ring (C8–C11/N2/C12) adopts a chair conformation with puckering parameters of Q = 0.5601 (17) Å, θ = 1.80 (17) and ϕ = 19 (10)°. The nitro group (N1/O2/O3) is twisted at an angle of 10.30 (11)° with respect to the attached benzene ring (C1–C6).
Figure 1

The mol­ecular structure of the title salt, showing the atom labelling. Displacement ellipsoids are drawn at the 30% probability level.

Supra­molecular features

In the crystal, adjacent cations and anions are linked by the N—H⋯O hydrogen bonds, which generate infinite chains along [100] (see Table 1 ▶ and Fig. 2 ▶). The chains are linked by C—H⋯π inter­actions, forming sheets lying parallel to the ab plane (Table 1 ▶).
Table 1

Hydrogen-bond geometry (, )

Cg1 is the centroid of the C1C6 ring.

DHA DHHA D A DHA
N2H2AO1i 0.901.922.788(2)161
N2H2BO1ii 0.901.802.6985(15)175
C6H6Cg1iii 0.932.753.428(3)130

Symmetry codes: (i) ; (ii) ; (iii) .

Figure 2

The crystal packing of the title salt, viewed along the b axis. Hydrogen bonds are shown as dashed lines (see Table 1 ▶ for details; H atoms not involved in hydrogen bonding have been omitted for clarity).

Synthesis and crystallization

Piperidine (0.85 g) and 4-nitro­phenol (1.39) in an equimolar (1:1) ratio were added to methanol as solvent and the mixture was stirred for 2 h, giving a clear solution. The solution was filtered into a beaker and sealed with parafilm and kept at room temperature for one week. Colourless crystals suitable for X-ray diffraction analysis were obtained after one week.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▶. The N-bound and C-bound H atoms were positioned geometrically and refined using a riding model: N—H = 0.90, C—H = 0.93 and 0.97 Å for CH and CH2 H atoms, respectively, and with U iso(H) = 1.2U eq(N,C).
Table 2

Experimental details

Crystal data
Chemical formulaC5H12N+C6H4NO3
M r 224.26
Crystal system, space groupOrthorhombic, P212121
Temperature (K)295
a, b, c ()6.867(5), 10.121(4), 16.497(6)
V (3)1146.6(10)
Z 4
Radiation typeMo K
(mm1)0.10
Crystal size (mm)0.26 0.22 0.20
 
Data collection
DiffractometerBruker Kappa APEXII CCD
Absorption correctionMulti-scan (SADABS; Sheldrick, 1996)
T min, T max 0.976, 0.981
No. of measured, independent and observed [I > 2(I)] reflections6505, 2908, 2612
R int 0.017
(sin /)max (1)0.673
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.035, 0.091, 1.04
No. of reflections2908
No. of parameters146
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.13, 0.16

Computer programs: APEX2 and SAINT (Bruker, 2004 ▶), SHELXS97 and SHELXL97 (Sheldrick, 2008 ▶) and PLATON (Spek, 2009 ▶).

Crystal structure: contains datablock(s) I, global. DOI: 10.1107/S1600536814025306/su5022sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814025306/su5022Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814025306/su5022Isup3.cml CCDC reference: 1034875 Additional supporting information: crystallographic information; 3D view; checkCIF report
C5H12N+·C6H4NO3F(000) = 480
Mr = 224.26Dx = 1.299 Mg m3
Orthorhombic, P212121Mo Kα radiation, λ = 0.71073 Å
Hall symbol: P 2ac 2abCell parameters from 658 reflections
a = 6.867 (5) Åθ = 2.4–28.6°
b = 10.121 (4) ŵ = 0.10 mm1
c = 16.497 (6) ÅT = 295 K
V = 1146.6 (10) Å3Block, colourless
Z = 40.26 × 0.22 × 0.20 mm
Bruker Kappa APEXII CCD diffractometer2908 independent reflections
Radiation source: fine-focus sealed tube2612 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.017
ω and φ scanθmax = 28.6°, θmin = 2.4°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −6→9
Tmin = 0.976, Tmax = 0.981k = −11→13
6505 measured reflectionsl = −22→10
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.035H-atom parameters constrained
wR(F2) = 0.091w = 1/[σ2(Fo2) + (0.0452P)2 + 0.1138P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
2908 reflectionsΔρmax = 0.13 e Å3
146 parametersΔρmin = −0.16 e Å3
0 restraintsExtinction correction: SHELXL97 (Sheldrick, 2008), Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.119 (6)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.08265 (18)0.22326 (12)0.09031 (7)0.0380 (3)
C20.0102 (2)0.31257 (12)0.14583 (7)0.0404 (3)
H2−0.02200.28480.19790.049*
C3−0.0144 (2)0.44223 (12)0.12419 (7)0.0403 (3)
H3−0.06380.50140.16210.048*
C40.03355 (18)0.48874 (11)0.04556 (7)0.0373 (3)
C50.1115 (2)0.39408 (13)−0.00839 (8)0.0474 (3)
H50.14910.4211−0.06000.057*
C60.1336 (2)0.26352 (13)0.01258 (8)0.0465 (3)
H60.18200.2029−0.02470.056*
C80.6387 (2)0.21154 (17)0.33603 (10)0.0570 (4)
H8A0.70570.27490.37020.068*
H8B0.73480.15030.31490.068*
C90.5422 (3)0.28329 (19)0.26652 (10)0.0626 (4)
H9A0.63860.33420.23710.075*
H9B0.48540.21970.22940.075*
C100.3854 (3)0.37423 (16)0.29817 (10)0.0545 (4)
H10A0.44420.44280.33120.065*
H10B0.31990.41640.25300.065*
C110.2391 (2)0.29893 (14)0.34801 (9)0.0480 (3)
H11A0.14440.36010.37030.058*
H11B0.17030.23700.31350.058*
C120.4907 (2)0.13639 (13)0.38617 (9)0.0488 (3)
H12A0.43410.06630.35370.059*
H12B0.55490.09630.43240.059*
N10.10251 (18)0.08685 (11)0.11247 (8)0.0487 (3)
N20.33415 (17)0.22610 (10)0.41493 (6)0.0405 (3)
H2A0.24380.17840.44150.049*
H2B0.38510.28450.45020.049*
O10.00554 (15)0.61052 (8)0.02564 (6)0.0458 (2)
O20.1387 (2)0.00445 (11)0.06015 (8)0.0730 (4)
O30.0795 (2)0.05548 (12)0.18390 (7)0.0771 (4)
U11U22U33U12U13U23
C10.0355 (6)0.0359 (5)0.0427 (6)0.0007 (5)−0.0004 (5)0.0057 (5)
C20.0423 (6)0.0453 (6)0.0337 (5)−0.0013 (6)−0.0019 (5)0.0049 (5)
C30.0434 (7)0.0414 (6)0.0361 (6)0.0028 (5)0.0005 (5)−0.0033 (5)
C40.0324 (6)0.0364 (6)0.0431 (6)−0.0006 (5)0.0018 (5)0.0030 (5)
C50.0545 (8)0.0445 (7)0.0432 (7)0.0065 (6)0.0179 (6)0.0089 (5)
C60.0517 (8)0.0412 (6)0.0466 (7)0.0096 (6)0.0155 (6)0.0019 (5)
C80.0425 (7)0.0574 (8)0.0710 (10)0.0055 (7)0.0071 (7)−0.0019 (7)
C90.0635 (10)0.0723 (10)0.0520 (8)−0.0044 (9)0.0162 (8)0.0073 (8)
C100.0568 (9)0.0489 (8)0.0577 (8)−0.0017 (7)−0.0023 (7)0.0146 (7)
C110.0388 (7)0.0459 (7)0.0594 (8)0.0031 (6)−0.0029 (6)0.0053 (6)
C120.0495 (8)0.0408 (6)0.0559 (7)0.0053 (6)−0.0015 (7)0.0016 (6)
N10.0516 (7)0.0396 (6)0.0547 (7)−0.0015 (5)0.0013 (6)0.0090 (5)
N20.0433 (6)0.0377 (5)0.0406 (5)−0.0053 (4)0.0014 (4)−0.0029 (4)
O10.0494 (5)0.0346 (4)0.0535 (5)0.0023 (4)0.0079 (5)0.0061 (4)
O20.1004 (10)0.0403 (5)0.0782 (8)0.0118 (6)0.0251 (7)0.0021 (5)
O30.1256 (13)0.0504 (6)0.0554 (6)−0.0028 (7)−0.0012 (7)0.0188 (5)
C1—C21.3798 (18)C9—C101.510 (2)
C1—C61.3902 (18)C9—H9A0.9700
C1—N11.4347 (17)C9—H9B0.9700
C2—C31.3703 (18)C10—C111.506 (2)
C2—H20.9300C10—H10A0.9700
C3—C41.4187 (17)C10—H10B0.9700
C3—H30.9300C11—N21.4793 (18)
C4—O11.2900 (15)C11—H11A0.9700
C4—C51.4129 (18)C11—H11B0.9700
C5—C61.374 (2)C12—N21.4848 (19)
C5—H50.9300C12—H12A0.9700
C6—H60.9300C12—H12B0.9700
C8—C91.511 (2)N1—O21.2257 (17)
C8—C121.516 (2)N1—O31.2306 (16)
C8—H8A0.9700N2—H2A0.9000
C8—H8B0.9700N2—H2B0.9000
C2—C1—C6120.73 (12)H9A—C9—H9B108.2
C2—C1—N1119.70 (11)C11—C10—C9110.87 (13)
C6—C1—N1119.55 (12)C11—C10—H10A109.5
C3—C2—C1119.92 (11)C9—C10—H10A109.5
C3—C2—H2120.0C11—C10—H10B109.5
C1—C2—H2120.0C9—C10—H10B109.5
C2—C3—C4121.83 (12)H10A—C10—H10B108.1
C2—C3—H3119.1N2—C11—C10111.42 (13)
C4—C3—H3119.1N2—C11—H11A109.3
O1—C4—C5122.95 (11)C10—C11—H11A109.3
O1—C4—C3121.02 (11)N2—C11—H11B109.3
C5—C4—C3116.03 (11)C10—C11—H11B109.3
C6—C5—C4122.36 (12)H11A—C11—H11B108.0
C6—C5—H5118.8N2—C12—C8110.68 (12)
C4—C5—H5118.8N2—C12—H12A109.5
C5—C6—C1119.09 (12)C8—C12—H12A109.5
C5—C6—H6120.5N2—C12—H12B109.5
C1—C6—H6120.5C8—C12—H12B109.5
C9—C8—C12111.16 (14)H12A—C12—H12B108.1
C9—C8—H8A109.4O2—N1—O3121.66 (13)
C12—C8—H8A109.4O2—N1—C1119.64 (12)
C9—C8—H8B109.4O3—N1—C1118.70 (12)
C12—C8—H8B109.4C11—N2—C12112.69 (11)
H8A—C8—H8B108.0C11—N2—H2A109.1
C10—C9—C8110.09 (13)C12—N2—H2A109.1
C10—C9—H9A109.6C11—N2—H2B109.1
C8—C9—H9A109.6C12—N2—H2B109.1
C10—C9—H9B109.6H2A—N2—H2B107.8
C8—C9—H9B109.6
C6—C1—C2—C30.8 (2)C12—C8—C9—C1056.35 (18)
N1—C1—C2—C3−178.12 (12)C8—C9—C10—C11−56.27 (19)
C1—C2—C3—C4−0.2 (2)C9—C10—C11—N255.67 (18)
C2—C3—C4—O1178.45 (13)C9—C8—C12—N2−55.31 (17)
C2—C3—C4—C5−1.21 (19)C2—C1—N1—O2169.09 (14)
O1—C4—C5—C6−177.44 (14)C6—C1—N1—O2−9.8 (2)
C3—C4—C5—C62.2 (2)C2—C1—N1—O3−9.8 (2)
C4—C5—C6—C1−1.8 (2)C6—C1—N1—O3171.33 (14)
C2—C1—C6—C50.2 (2)C10—C11—N2—C12−55.30 (16)
N1—C1—C6—C5179.09 (14)C8—C12—N2—C1154.81 (16)
D—H···AD—HH···AD···AD—H···A
N2—H2A···O1i0.901.922.788 (2)161
N2—H2B···O1ii0.901.802.6985 (15)175
C6—H6···Cg1iii0.932.753.428 (3)130
  5 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

2.  1-Acetyl-c-3,t-3-dimethyl-r-2,c-6-diphenyl-piperidin-4-one.

Authors:  S Aravindhan; S Ponnuswamy; M Jamesh; P Ramesh; M N Ponnuswamy
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-07-25

3.  Structure validation in chemical crystallography.

Authors:  Anthony L Spek
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20

4.  4-Nitro-phenol-piperazine (2/1).

Authors:  Perumal Nagapandiselvi; Srinivasan Muralidharan; Thothadri Srinivasan; Rengaswamy Goplalakrishnan; Devadasan Velmurugan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2013-06-08

5.  2-Carboxyl-atopyridinium-4-nitro-phenol (1/1).

Authors:  A Sankar; S Ambalatharasu; G Peramaiyan; G Chakkaravarthi; R Kanagadurai
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-03-15
  5 in total

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