Literature DB >> 24046620

4-Nitro-phenol-piperazine (2/1).

Perumal Nagapandiselvi1, Srinivasan Muralidharan, Thothadri Srinivasan, Rengaswamy Goplalakrishnan, Devadasan Velmurugan.   

Abstract

In the title adduct, C6H5NO3·0.5C4H10N2, the piperazine ring possesses inversion symmetry and has a chair conformation. Its mean plane makes a dihedral angle of 65.45 (7)° with the 4-nitro-phenol ring. In the crystal, the piperazine ring is linked to two 4-nitro-phenol mol-ecules via O-H⋯N hydrogen bonds. The mol-ecules are also linked via bifurcated N-H⋯(O,O) hydrogen bonds involving the NO2 O atoms, forming a two-dimensional network lying parallel to (102). The networks are linked via C-H⋯O hydrogen bonds, forming a three-dimensional structure.

Entities:  

Year:  2013        PMID: 24046620      PMCID: PMC3772477          DOI: 10.1107/S1600536813015328

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological properties of piperazine compounds, see: Foroumadi et al. (2007 ▶); Upadhayaya et al. (2004 ▶); Chen et al. (2006 ▶); Cunico et al. (2009 ▶); Smits et al. (2008 ▶); Becker et al. (2006 ▶).

Experimental

Crystal data

C6H5NO3·0.5C4H10N2 M = 182.18 Monoclinic, a = 6.1879 (2) Å b = 19.9274 (7) Å c = 6.9846 (2) Å β = 91.199 (1)° V = 861.07 (5) Å3 Z = 4 Mo Kα radiation μ = 0.11 mm−1 T = 293 K 0.30 × 0.25 × 0.20 mm

Data collection

Bruker SMART APEXII area-detector diffractometer Absorption correction: multi-scan (SADABS; Bruker, 2008 ▶) T min = 0.968, T max = 0.979 12570 measured reflections 1763 independent reflections 1437 reflections with I > 2σ(I) R int = 0.024

Refinement

R[F 2 > 2σ(F 2)] = 0.037 wR(F 2) = 0.111 S = 1.04 1763 reflections 126 parameters H atoms treated by a mixture of independent and constrained refinement Δρmax = 0.19 e Å−3 Δρmin = −0.17 e Å−3 Data collection: APEX2 (Bruker, 2008 ▶); cell refinement: SAINT (Bruker, 2008 ▶); data reduction: SAINT; program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: ORTEP-3 for Windows (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶); software used to prepare material for publication: SHELXL97 and PLATON (Spek, 2009 ▶). Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536813015328/su2605sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536813015328/su2605Isup2.hkl Click here for additional data file. Supplementary material file. DOI: 10.1107/S1600536813015328/su2605Isup3.cml Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C6H5NO3·0.5C4H10N2F(000) = 384
Mr = 182.18Dx = 1.405 Mg m3
Monoclinic, P21/cMo Kα radiation, λ = 0.71073 Å
Hall symbol: -P 2ybcCell parameters from 1763 reflections
a = 6.1879 (2) Åθ = 2.0–26.4°
b = 19.9274 (7) ŵ = 0.11 mm1
c = 6.9846 (2) ÅT = 293 K
β = 91.199 (1)°Block, yellow
V = 861.07 (5) Å30.30 × 0.25 × 0.20 mm
Z = 4
Bruker SMART APEXII area-detector diffractometer1763 independent reflections
Radiation source: fine-focus sealed tube1437 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.024
ω and φ scansθmax = 26.4°, θmin = 2.0°
Absorption correction: multi-scan (SADABS; Bruker, 2008)h = −7→7
Tmin = 0.968, Tmax = 0.979k = −24→24
12570 measured reflectionsl = −8→8
Refinement on F2Secondary atom site location: difference Fourier map
Least-squares matrix: fullHydrogen site location: inferred from neighbouring sites
R[F2 > 2σ(F2)] = 0.037H atoms treated by a mixture of independent and constrained refinement
wR(F2) = 0.111w = 1/[σ2(Fo2) + (0.0534P)2 + 0.1751P] where P = (Fo2 + 2Fc2)/3
S = 1.04(Δ/σ)max < 0.001
1763 reflectionsΔρmax = 0.19 e Å3
126 parametersΔρmin = −0.17 e Å3
0 restraintsExtinction correction: SHELXL, Fc*=kFc[1+0.001xFc2λ3/sin(2θ)]-1/4
Primary atom site location: structure-invariant direct methodsExtinction coefficient: 0.022 (4)
Geometry. All esds (except the esd in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell esds are taken into account individually in the estimation of esds in distances, angles and torsion angles; correlations between esds in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell esds is used for estimating esds involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > 2sigma(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
C10.3284 (2)0.39314 (6)0.57841 (18)0.0431 (3)
C20.2308 (2)0.33121 (6)0.61501 (19)0.0446 (3)
H20.09290.33000.66540.053*
C30.3365 (2)0.27233 (6)0.57715 (19)0.0436 (3)
H30.27110.23130.60190.052*
C40.5409 (2)0.27456 (6)0.50202 (18)0.0412 (3)
C50.6389 (2)0.33516 (7)0.45997 (18)0.0460 (3)
H50.77560.33590.40720.055*
C60.5330 (2)0.39403 (7)0.4966 (2)0.0474 (3)
H60.59740.43480.46700.057*
C70.8041 (2)−0.00321 (8)0.3919 (2)0.0604 (4)
H7A0.7274−0.00850.27030.073*
H7B0.69820.00240.49110.073*
C81.0620 (3)0.06407 (7)0.5674 (2)0.0615 (4)
H8A0.96050.07070.66970.074*
H8B1.15450.10330.56180.074*
N10.65536 (19)0.21262 (6)0.46944 (16)0.0506 (3)
N20.9439 (2)0.05619 (6)0.38520 (18)0.0515 (3)
O10.84102 (19)0.21550 (6)0.4113 (2)0.0764 (4)
O20.56486 (19)0.15891 (5)0.50020 (17)0.0672 (3)
O30.23383 (18)0.45125 (5)0.61778 (16)0.0628 (3)
H3A0.13300.44470.68980.094*
H2A0.867 (3)0.0873 (10)0.362 (3)0.071 (5)*
U11U22U33U12U13U23
C10.0508 (7)0.0362 (6)0.0425 (7)0.0028 (5)0.0080 (5)−0.0010 (5)
C20.0394 (6)0.0439 (7)0.0507 (7)0.0000 (5)0.0092 (5)−0.0019 (5)
C30.0464 (7)0.0370 (6)0.0473 (7)−0.0033 (5)0.0015 (6)−0.0022 (5)
C40.0439 (7)0.0420 (7)0.0376 (6)0.0076 (5)−0.0014 (5)−0.0052 (5)
C50.0397 (7)0.0547 (8)0.0438 (7)0.0013 (5)0.0079 (5)−0.0017 (6)
C60.0521 (8)0.0420 (7)0.0486 (7)−0.0058 (6)0.0106 (6)0.0011 (5)
C70.0445 (7)0.0688 (10)0.0680 (9)−0.0099 (7)0.0014 (6)0.0101 (8)
C80.0785 (10)0.0362 (7)0.0703 (10)−0.0139 (7)0.0146 (8)−0.0050 (6)
N10.0530 (7)0.0529 (7)0.0458 (6)0.0152 (5)−0.0031 (5)−0.0079 (5)
N20.0537 (7)0.0356 (6)0.0658 (8)0.0096 (5)0.0141 (6)0.0094 (5)
O10.0564 (7)0.0762 (8)0.0972 (10)0.0210 (6)0.0138 (6)−0.0163 (6)
O20.0812 (8)0.0428 (6)0.0776 (8)0.0125 (5)0.0034 (6)−0.0018 (5)
O30.0740 (7)0.0385 (5)0.0772 (8)0.0080 (5)0.0329 (6)0.0014 (5)
C1—O31.3290 (15)C7—N21.4673 (18)
C1—C61.3995 (19)C7—C8i1.493 (2)
C1—C21.4000 (17)C7—H7A0.9700
C2—C31.3720 (18)C7—H7B0.9700
C2—H20.9300C8—N21.463 (2)
C3—C41.3799 (19)C8—C7i1.493 (2)
C3—H30.9300C8—H8A0.9700
C4—C51.3855 (18)C8—H8B0.9700
C4—N11.4434 (16)N1—O11.2279 (16)
C5—C61.3706 (18)N1—O21.2290 (16)
C5—H50.9300N2—H2A0.80 (2)
C6—H60.9300O3—H3A0.8200
O3—C1—C6118.65 (11)N2—C7—H7A109.7
O3—C1—C2122.45 (12)C8i—C7—H7A109.7
C6—C1—C2118.90 (11)N2—C7—H7B109.7
C3—C2—C1120.60 (12)C8i—C7—H7B109.7
C3—C2—H2119.7H7A—C7—H7B108.2
C1—C2—H2119.7N2—C8—C7i110.09 (12)
C2—C3—C4119.37 (12)N2—C8—H8A109.6
C2—C3—H3120.3C7i—C8—H8A109.6
C4—C3—H3120.3N2—C8—H8B109.6
C3—C4—C5121.15 (11)C7i—C8—H8B109.6
C3—C4—N1119.28 (12)H8A—C8—H8B108.2
C5—C4—N1119.57 (12)O1—N1—O2122.10 (12)
C6—C5—C4119.55 (12)O1—N1—C4118.54 (12)
C6—C5—H5120.2O2—N1—C4119.36 (12)
C4—C5—H5120.2C8—N2—C7110.05 (11)
C5—C6—C1120.37 (12)C8—N2—H2A112.3 (14)
C5—C6—H6119.8C7—N2—H2A106.6 (14)
C1—C6—H6119.8C1—O3—H3A109.5
N2—C7—C8i109.63 (11)
O3—C1—C2—C3−178.17 (12)O3—C1—C6—C5177.78 (12)
C6—C1—C2—C32.1 (2)C2—C1—C6—C5−2.5 (2)
C1—C2—C3—C4−0.1 (2)C3—C4—N1—O1−176.52 (12)
C2—C3—C4—C5−1.5 (2)C5—C4—N1—O12.59 (19)
C2—C3—C4—N1177.55 (11)C3—C4—N1—O23.58 (19)
C3—C4—C5—C61.2 (2)C5—C4—N1—O2−177.31 (11)
N1—C4—C5—C6−177.93 (11)C7i—C8—N2—C759.04 (16)
C4—C5—C6—C10.9 (2)C8i—C7—N2—C8−58.77 (17)
D—H···AD—HH···AD···AD—H···A
O3—H3A···N2ii0.821.822.6210 (16)167
N2—H2A···O10.796 (19)2.58 (2)3.2437 (17)141.4 (17)
N2—H2A···O20.796 (19)2.557 (19)3.2273 (17)142.8 (19)
C2—H2···O1ii0.932.513.3428 (17)149
C6—H6···O3iii0.932.573.5035 (17)179
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯A D—HH⋯A DA D—H⋯A
O3—H3A⋯N2i 0.821.822.6210 (16)167
N2—H2A⋯O10.796 (19)2.58 (2)3.2437 (17)141.4 (17)
N2—H2A⋯O20.796 (19)2.557 (19)3.2273 (17)142.8 (19)
C2—H2⋯O1i 0.932.513.3428 (17)149
C6—H6⋯O3ii 0.932.573.5035 (17)179

Symmetry codes: (i) ; (ii) .

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