Literature DB >> 25548248

Another look at mutations in ribosomal protein S4 lends strong support to the domain closure model.

Kurt Fredrick1.   

Abstract

Ribosomes employ a "kinetic discrimination" mechanism, in which correct substrates are incorporated more rapidly than incorrect ones. The structural basis of this mechanism may involve 30S domain closure, a global conformational change that coincides with codon recognition. In a direct screen for fidelity-altering mutations, Agarwal and coworkers (D. Agarwal, D. Kamath, S. T. Gregory, and M. O'Connor, J Bacteriol 197:1017-1025, 2015, doi:10.1128/JB.02485-14) isolated mutations that progressively truncate the C terminus of S4. All of these promote miscoding and undoubtedly destabilize the S4-S5 interface, consistent with the domain closure model.
Copyright © 2015, American Society for Microbiology. All Rights Reserved.

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Year:  2014        PMID: 25548248      PMCID: PMC4336348          DOI: 10.1128/JB.02579-14

Source DB:  PubMed          Journal:  J Bacteriol        ISSN: 0021-9193            Impact factor:   3.490


  32 in total

1.  Selection of tRNA by the ribosome requires a transition from an open to a closed form.

Authors:  James M Ogle; Frank V Murphy; Michael J Tarry; V Ramakrishnan
Journal:  Cell       Date:  2002-11-27       Impact factor: 41.582

2.  Compensatory adaptation to the deleterious effect of antibiotic resistance in Salmonella typhimurium.

Authors:  Sophie Maisnier-Patin; Otto G Berg; Lars Liljas; Dan I Andersson
Journal:  Mol Microbiol       Date:  2002-10       Impact factor: 3.501

Review 3.  Insights into the decoding mechanism from recent ribosome structures.

Authors:  James M Ogle; Andrew P Carter; V Ramakrishnan
Journal:  Trends Biochem Sci       Date:  2003-05       Impact factor: 13.807

4.  Kinetic determinants of high-fidelity tRNA discrimination on the ribosome.

Authors:  Kirill B Gromadski; Marina V Rodnina
Journal:  Mol Cell       Date:  2004-01-30       Impact factor: 17.970

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Authors:  J Ninio
Journal:  Biochimie       Date:  1975       Impact factor: 4.079

6.  Analysis of rpsD mutations in Escherichia coli. II. Physiology of some representative mutants.

Authors:  M O Olsson
Journal:  Mol Gen Genet       Date:  1979-02-01

7.  Kinetic proofreading: a new mechanism for reducing errors in biosynthetic processes requiring high specificity.

Authors:  J J Hopfield
Journal:  Proc Natl Acad Sci U S A       Date:  1974-10       Impact factor: 11.205

8.  Streptomycin-resistant and streptomycin-dependent mutants of the extreme thermophile Thermus thermophilus.

Authors:  S T Gregory; J H Cate; A E Dahlberg
Journal:  J Mol Biol       Date:  2001-06-01       Impact factor: 5.469

9.  Construction of an in vivo nonsense readthrough assay system and functional analysis of ribosomal proteins S12, S4, and S5 in Bacillus subtilis.

Authors:  T Inaoka; K Kasai; K Ochi
Journal:  J Bacteriol       Date:  2001-09       Impact factor: 3.490

10.  Analysis of rpsD mutations in Escherichia coli. I. Comparison of mutants with various alterations in ribosomal protein S4.

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Journal:  Mol Gen Genet       Date:  1979-02-01
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  4 in total

1.  The C-terminus of ribosomal protein uS4 contributes to small ribosomal subunit biogenesis and the fidelity of translation.

Authors:  Divya Kamath; Benjamin B Allgeyer; Steven T Gregory; Margaret C Bielski; David M Roelofsz; Sharon L Sabapathypillai; Nikhil Vaid; Michael O'Connor
Journal:  Biochimie       Date:  2017-05-05       Impact factor: 4.079

Review 2.  Intersubunit Bridges of the Bacterial Ribosome.

Authors:  Qi Liu; Kurt Fredrick
Journal:  J Mol Biol       Date:  2016-02-13       Impact factor: 5.469

3.  Epistasis analysis of 16S rRNA ram mutations helps define the conformational dynamics of the ribosome that influence decoding.

Authors:  Lanqing Ying; Kurt Fredrick
Journal:  RNA       Date:  2016-02-12       Impact factor: 4.942

4.  Ribosomal ambiguity (ram) mutations promote the open (off) to closed (on) transition and thereby increase miscoding.

Authors:  Eric D Hoffer; Tatsuya Maehigashi; Kurt Fredrick; Christine M Dunham
Journal:  Nucleic Acids Res       Date:  2019-02-20       Impact factor: 16.971

  4 in total

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