Literature DB >> 25517430

Ultrafast cooling reveals microsecond-scale biomolecular dynamics.

Mark E Polinkovsky1, Yann Gambin2, Priya R Banerjee2, Michael J Erickstad1, Alex Groisman1, Ashok A Deniz2.   

Abstract

The temperature-jump technique, in which the sample is rapidly heated by a powerful laser pulse, has been widely used to probe the fast dynamics of folding of proteins and nucleic acids. However, the existing temperature-jump setups tend to involve sophisticated and expensive instrumentation, while providing only modest temperature changes of ~10-15 °C, and the temperature changes are only rapid for heating, but not cooling. Here we present a setup comprising a thermally conductive sapphire substrate with light-absorptive nano-coating, a microfluidic device and a rapidly switched moderate-power infrared laser with the laser beam focused on the nano-coating, enabling heating and cooling of aqueous solutions by ~50 °C on a 1-μs time scale. The setup is used to probe folding and unfolding dynamics of DNA hairpins after direct and inverse temperature jumps, revealing low-pass filter behaviour during periodic temperature variations.

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Year:  2014        PMID: 25517430     DOI: 10.1038/ncomms6737

Source DB:  PubMed          Journal:  Nat Commun        ISSN: 2041-1723            Impact factor:   14.919


  7 in total

1.  Temperature-Jump 2D IR Spectroscopy with Intensity-Modulated CW Optical Heating.

Authors:  Brennan Ashwood; Nicholas H C Lewis; Paul J Sanstead; Andrei Tokmakoff
Journal:  J Phys Chem B       Date:  2020-09-21       Impact factor: 2.991

Review 2.  Relating sequence encoded information to form and function of intrinsically disordered proteins.

Authors:  Rahul K Das; Kiersten M Ruff; Rohit V Pappu
Journal:  Curr Opin Struct Biol       Date:  2015-04-02       Impact factor: 6.809

3.  Reentrant Phase Transitions and Non-Equilibrium Dynamics in Membraneless Organelles.

Authors:  Anthony N Milin; Ashok A Deniz
Journal:  Biochemistry       Date:  2018-04-03       Impact factor: 3.162

Review 4.  Time-resolved solid state NMR of biomolecular processes with millisecond time resolution.

Authors:  Jaekyun Jeon; C Blake Wilson; Wai-Ming Yau; Kent R Thurber; Robert Tycko
Journal:  J Magn Reson       Date:  2022-08-17       Impact factor: 2.734

Review 5.  Deciphering Complexity in Molecular Biophysics with Single-Molecule Resolution.

Authors:  Ashok A Deniz
Journal:  J Mol Biol       Date:  2015-12-19       Impact factor: 5.469

6.  Measuring RNA UNCG Tetraloop Refolding Dynamics Using Temperature-Jump/Drop Infrared Spectroscopy.

Authors:  C P Howe; G M Greetham; B Procacci; A W Parker; N T Hunt
Journal:  J Phys Chem Lett       Date:  2022-09-27       Impact factor: 6.888

7.  Integrating single-molecule spectroscopy and simulations for the study of intrinsically disordered proteins.

Authors:  Jhullian J Alston; Andrea Soranno; Alex S Holehouse
Journal:  Methods       Date:  2021-04-06       Impact factor: 3.608

  7 in total

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