Literature DB >> 25506719

Fast native-SAD phasing for routine macromolecular structure determination.

Tobias Weinert1, Vincent Olieric1, Sandro Waltersperger1, Ezequiel Panepucci1, Lirong Chen2, Hua Zhang2, Dayong Zhou2, John Rose2, Akio Ebihara3, Seiki Kuramitsu4, Dianfan Li5, Nicole Howe5, Gisela Schnapp6, Alexander Pautsch6, Katja Bargsten7, Andrea E Prota7, Parag Surana8, Jithesh Kottur8, Deepak T Nair8, Federica Basilico9, Valentina Cecatiello9, Sebastiano Pasqualato9, Andreas Boland10, Oliver Weichenrieder10, Bi-Cheng Wang2, Michel O Steinmetz7, Martin Caffrey5, Meitian Wang1.   

Abstract

We describe a data collection method that uses a single crystal to solve X-ray structures by native SAD (single-wavelength anomalous diffraction). We solved the structures of 11 real-life examples, including a human membrane protein, a protein-DNA complex and a 266-kDa multiprotein-ligand complex, using this method. The data collection strategy is suitable for routine structure determination and can be implemented at most macromolecular crystallography synchrotron beamlines.

Entities:  

Mesh:

Substances:

Year:  2014        PMID: 25506719     DOI: 10.1038/nmeth.3211

Source DB:  PubMed          Journal:  Nat Methods        ISSN: 1548-7091            Impact factor:   28.547


  25 in total

1.  Can anomalous signal of sulfur become a tool for solving protein crystal structures?

Authors:  Z Dauter; M Dauter; E de La Fortelle; G Bricogne; G M Sheldrick
Journal:  J Mol Biol       Date:  1999-05-28       Impact factor: 5.469

Review 2.  Microtubules as a target for anticancer drugs.

Authors:  Mary Ann Jordan; Leslie Wilson
Journal:  Nat Rev Cancer       Date:  2004-04       Impact factor: 60.716

3.  Quantifying instrument errors in macromolecular X-ray data sets.

Authors:  Kay Diederichs
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-05-15

4.  [27] Maximum-likelihood heavy-atom parameter refinement for multiple isomorphous replacement and multiwavelength anomalous diffraction methods.

Authors:  Eric de La Fortelle; Gérard Bricogne
Journal:  Methods Enzymol       Date:  1997       Impact factor: 1.600

5.  Structural genomics projects in Japan.

Authors:  S Yokoyama; H Hirota; T Kigawa; T Yabuki; M Shirouzu; T Terada; Y Ito; Y Matsuo; Y Kuroda; Y Nishimura; Y Kyogoku; K Miki; R Masui; S Kuramitsu
Journal:  Nat Struct Biol       Date:  2000-11

6.  Resolution of phase ambiguity in macromolecular crystallography.

Authors:  B C Wang
Journal:  Methods Enzymol       Date:  1985       Impact factor: 1.600

7.  Experimental phasing with SHELXC/D/E: combining chain tracing with density modification.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-03-24

8.  The Buccaneer software for automated model building. 1. Tracing protein chains.

Authors:  Kevin Cowtan
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2006-08-19

9.  Robust structural analysis of native biological macromolecules from multi-crystal anomalous diffraction data.

Authors:  Qun Liu; Qinglian Liu; Wayne A Hendrickson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2013-06-13

10.  Phaser crystallographic software.

Authors:  Airlie J McCoy; Ralf W Grosse-Kunstleve; Paul D Adams; Martyn D Winn; Laurent C Storoni; Randy J Read
Journal:  J Appl Crystallogr       Date:  2007-07-13       Impact factor: 3.304

View more
  49 in total

1.  Structural Evidence for Dimer-Interface-Driven Regulation of the Type II Cysteine Desulfurase, SufS.

Authors:  Jack A Dunkle; Michael R Bruno; F Wayne Outten; Patrick A Frantom
Journal:  Biochemistry       Date:  2019-01-07       Impact factor: 3.162

Review 2.  Atomic-level analysis of membrane-protein structure.

Authors:  Wayne A Hendrickson
Journal:  Nat Struct Mol Biol       Date:  2016-06-07       Impact factor: 15.369

3.  Structure of the heterophilic interaction between the nectin-like 4 and nectin-like 1 molecules.

Authors:  Xiao Liu; Tai An; Dongdong Li; Zheng Fan; Pan Xiang; Chen Li; Wenyi Ju; Jianing Li; Gen Hu; Bo Qin; Bin Yin; Justyna Aleksandra Wojdyla; Meitian Wang; Jiangang Yuan; Boqin Qiang; Pengcheng Shu; Sheng Cui; Xiaozhong Peng
Journal:  Proc Natl Acad Sci U S A       Date:  2019-01-23       Impact factor: 11.205

Review 4.  Crystallographic phasing from weak anomalous signals.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Curr Opin Struct Biol       Date:  2015-09-30       Impact factor: 6.809

5.  Structure of GPN-Loop GTPase Npa3 and Implications for RNA Polymerase II Assembly.

Authors:  Jürgen Niesser; Felix R Wagner; Dirk Kostrewa; Wolfgang Mühlbacher; Patrick Cramer
Journal:  Mol Cell Biol       Date:  2015-12-28       Impact factor: 4.272

6.  Biochemical and structural characterization of hepatitis A virus 2C reveals an unusual ribonuclease activity on single-stranded RNA.

Authors:  Pu Chen; Justyna Aleksandra Wojdyla; Ombretta Colasanti; Zhijian Li; Bo Qin; Meitian Wang; Volker Lohmann; Sheng Cui
Journal:  Nucleic Acids Res       Date:  2022-08-10       Impact factor: 19.160

7.  Native SAD phasing at room temperature.

Authors:  Jack B Greisman; Kevin M Dalton; Candice J Sheehan; Margaret A Klureza; Igor Kurinov; Doeke R Hekstra
Journal:  Acta Crystallogr D Struct Biol       Date:  2022-07-27       Impact factor: 5.699

Review 8.  Contemporary Use of Anomalous Diffraction in Biomolecular Structure Analysis.

Authors:  Qun Liu; Wayne A Hendrickson
Journal:  Methods Mol Biol       Date:  2017

9.  Structure of the cyanobactin oxidase ThcOx from Cyanothece sp. PCC 7425, the first structure to be solved at Diamond Light Source beamline I23 by means of S-SAD.

Authors:  Andrew F Bent; Greg Mann; Wael E Houssen; Vitaliy Mykhaylyk; Ramona Duman; Louise Thomas; Marcel Jaspars; Armin Wagner; James H Naismith
Journal:  Acta Crystallogr D Struct Biol       Date:  2016-10-28       Impact factor: 7.652

Review 10.  A comprehensive review of the lipid cubic phase or in meso method for crystallizing membrane and soluble proteins and complexes.

Authors:  Martin Caffrey
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2015-01-01       Impact factor: 1.056

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.