| Literature DB >> 25506053 |
Salvador Cervin Serrano1, Dalia González Villareal2, Maribel Aguilar-Medina2, Jose Guillermo Romero-Navarro2, Jose Geovanni Romero Quintana2, Eliakym Arámbula Meraz2, Ignacio Osuna Ramírez2, Veronica Picos-Cárdenas3, Julio Granados4, Iris Estrada-García5, Guzman Sánchez-Schmitz6, Rosalío Ramos-Payán7.
Abstract
Intervertebral disc degeneration (IDD) is the most common diagnosis in patients with back pain, a leading cause of musculoskeletal disability worldwide. Several conditions, such as occupational activities, gender, age, and obesity, have been associated with IDD. However, the development of this disease has strong genetic determinants. In this study, we explore the possible association between rs1800587 (c.-949C>T) of interleukin-1 alpha (IL1A) and rs2228570 (c.2T>V) and rs731236 (c.1056T>C) of vitamin D receptor (VDR) gene polymorphisms and the development of IDD in northwestern Mexican Mestizo population. Gene polymorphisms were analyzed by polymerase chain reaction followed by restriction fragment length polymorphism, in two groups matched by age and gender: patients with symptomatic lumbar IDD (n = 100) and subjects with normal lumbar-spine MRI-scans (n = 100). Distribution of the mutated alleles in patients and controls was 27.0% versus 28.0% (P = 0.455) for T of rs1800587 (IL1A); 53.0% versus 58.0% (P = 0.183) for V of rs2228570 (VDR); and 18.0% versus 21.0% (P = 0.262) for C of rs731236 (VDR). Our results showed no association between the studied polymorphisms and IDD in this population. This is the first report on the contribution of gene polymorphisms on IDD in a Mexican population.Entities:
Year: 2014 PMID: 25506053 PMCID: PMC4258367 DOI: 10.1155/2014/302568
Source DB: PubMed Journal: Int J Genomics ISSN: 2314-436X Impact factor: 2.326
Conditions and products of PCR-RFLP.
| Gene | SNPs | Primers | Tm | RE | bp | Alleles |
|---|---|---|---|---|---|---|
| (°C) | (bp) | |||||
|
| rs1800587 | 5′-GCATGCCATCACACCTAGTT-3′ | 56 |
| 193 | C: 174 and 19 |
| 5′-TTACATATGAGCCTTCCATG-3′ | T: 193 | |||||
|
| ||||||
|
| rs2228570 | 5′-AGCTGGCCCTGGCACTGCTCTGCTCT-3′ | 60 |
| 265 | f: 197 and 68 |
| 5′-ATGGAAACACCTTGCTTCTTCTCCCTC-3′ | F: 265 | |||||
| rs731236 | 5′-CAGAGCATGGACAGGGAGCAAG-3′ | 59 |
| 746 | T: 495 and 251 | |
| 5′-GCAACTCCTCATGGCTGAGGTCTCA-3′ | t: 294, 251, and 201 | |||||
Tm: annealing temperature; RE: restriction enzyme.
Allelic (af) and genotype (gf) frequencies of IL1A and VDR polymorphisms in controls subjects and patients with IDD.
| SNPs | Patients | Controls | ||
|---|---|---|---|---|
| ( | ( | |||
| rs1800587 ( | ||||
|
| ||||
| Alleles |
| af |
| af |
|
| ||||
| T | 53 | 0.27 | 55 | 0.28 |
| C | 147 | 0.74 | 145 | 0.73 |
|
| ||||
| Genotypes |
| gf |
| gf |
|
| ||||
| TT | 4 | 0.04 | 10 | 0.10 |
| CT | 45 | 0.45 | 35 | 0.35 |
| CC | 51 | 0.51 | 55 | 0.55 |
|
| ||||
| rs2228570 ( | ||||
|
| ||||
| Alleles |
| af |
| af |
|
| ||||
| V | 105 | 0.53 | 115 | 0.58 |
| T | 95 | 0.48 | 85 | 0.43 |
|
| ||||
| Genotypes |
| gf |
| gf |
|
| ||||
| VV | 20 | 0.20 | 32 | 0.32 |
| TV | 65 | 0.65 | 51 | 0.51 |
| TT | 15 | 0.15 | 17 | 0.17 |
|
| ||||
| rs731236 ( | ||||
|
| ||||
| Alleles |
| af |
| af |
|
| ||||
| C | 35 | 0.18 | 41 | 0.21 |
| T | 165 | 0.83 | 159 | 0.80 |
|
| ||||
| Genotypes |
| gf |
| gf |
|
| ||||
| CC | 4 | 0.04 | 3 | 0.03 |
| TC | 27 | 0.27 | 35 | 0.35 |
| TT | 69 | 0.69 | 62 | 0.62 |