Literature DB >> 25484733

Crystal structure of 6,6'-dimethyl-2H,2'H-3,4'-bichromene-2,2'-dione.

Kiran K Pujar1, Manohar V Kulkarni1, G N Anil Kumar2.   

Abstract

In the title compound, C20H14O4, the dihedral angle between the two coumarin ring systems is 52.37 (19)°, showing a gauche arrangement across the C-C bond which links the two units. The carbonyl groups of the two coumarin units adopt an s-trans arrangement. In the crystal, pairs of C-H⋯O hydrogen bonds and π-π inter-actions [centroid-centroid distance = 3.631 (2) Å] connect the mol-ecules into inversion dimers.

Entities:  

Keywords:  bicoumarin; crystal structure; hydrogen bonds; π–π inter­actions

Year:  2014        PMID: 25484733      PMCID: PMC4257244          DOI: 10.1107/S1600536814021825

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Chemical context

Bicoumarins, in which two coumarin ring systems are directly linked through a CC bond, are a group of regio-isomers which are of synthetic inter­est (Ilyas & Parveen, 1996 ▶; Dubovik et al., 2004 ▶; Frasinyuk et al., 2012 ▶). Their natural occurrence and structural diversity originate from various positions of the linkage which can lead to pyran–pyran-linked bicoumarins, viz., 3-3′, 3-4′, 4-4′, or pyran–benzene-linked bicoumarins wherein the points of linkage are C3/C4 with the C5–C8 positions in the second coumarin moiety (Hussain et al., 2012 ▶). 3-3′ Bicoumarins isolated from Chinese medicinal plants and Mediterranean sponges (Panichayupakaranant et al., 1998 ▶) have been shown to exhibit insecticidal and anti-proliferative properties. 8-8′ Bicoumarins have shown anti­leukemic, nematocidal and cardiotoxic activity as well as anti­schistosomial, sedative and hypotensive effects (Ulubelen et al., 1986 ▶). 6-8′ Bicoumarins have been evaluated for urease inhibitory activity (Ayaz et al., 2006 ▶). Atropisomerism has been observed for naturally occurring 3-6′ bicoumarins (Zhan et al., 2003 ▶). 5-5′ Bicoumarins competitively inhibit epoxide reductase of vitamin K, preventing the reduction of vitamin K into hydro­quinone, leading to their anti­coagulant activity (Zhou et al., 2009 ▶). 3-8′ Bicoumarins exhibit cytotoxicity towards human solid tumour cell lines, affording ED50 values of 7.5, 55, 5.8 µg/ml against non-small-cell-lung carcinoma A-549, breast adenocarcinoma MCF-7, and colon adeno-carcinoma HT-29 cells respectively (Tepaske & Gloer, 1992 ▶). In view of the above cited activities of directly linked coumarin dimers, the present work reports the synthesis under metal-free conditions of a new 4-3′ bicoumarin and its structure.

Structural commentary

The mol­ecular structure of the title compound is shown in Fig. 1 ▶. The packing viewed along the b axis (Fig. 2 ▶) shows the existence of inter­molecular C—H⋯O hydrogen bonds between the carbonyl O4 of one coumarin moiety and the aromatic H8 of the second unit (Table 1 ▶), which has also been observed in a 3-5′ bicoumarin (Fun et al., 2009 ▶). The two coumarin rings exhibit an s-trans arrangement across the C4—C11 bond for the two double bonds viz. C3=C4 and C11=C12. The non-planar nature of the bi-heterocyclic system is revealed through the torsion angles C3—C4—C11—C12 [−52.37 (19)°] and C10—C4—C11—C19 [−59.32 (17)°], which almost corresponds to a gauche conformation.
Figure 1

The mol­ecular structure of the title compound, showing the atom-labelling scheme and with displacement ellipsoids drawn at the 50% probability level.

Figure 2

A packing diagram of the title compound, viewed along the b axis. Dashed lines indicate C—H⋯O hydrogen bonds and π–π inter­actions. H atoms not involved in hydrogen bonding have been omitted for clarity.

Table 1

Hydrogen-bond geometry (, )

DHA DHHA D A DHA
C8H8O4i 0.932.533.330(2)145

Symmetry code: (i) .

Supra­molecular features

In the crystal, pairs of C—H⋯O hydrogen bonds and π–π inter­actions [Cg1Cg1i = 3.631 (2); slippage = 1.491 Å; Cg1 is the centroid of the C5–C10 ring; symmetry code: (i) 1 − x, −y, −z] connect mol­ecules into inversion dimers (Fig. 2 ▶).

Database survey

A search of the Cambridge Structural Database (Version 5.35, updates Feb 2014; Groom & Allen, 2014 ▶) revealed two related structures, viz. 7,7′,8,8′-tetra­meth­oxy-4,4′-dimethyl-3,5′-bichromene-2,2′-dione (Fun et al., 2009 ▶) and 7,7′-dihy­droxy-4,4′-dimethyl-3,4-di­hydro-2H,2′H-4,6′-bichromene-2,2′-dione (Pereira Silva et al., 2011 ▶). In these two compounds, the dihedral angles between the coumarin ring systems are 79.93 (3) and 88.07 (2)°, respectively. The corresponding angle in the title compound is 52.37 (19)°.

Synthesis and Crystallization

6-Methyl­coumarin 4-acetic acid (0.01 mol) and 5-methyl­salicyl­aldehyde (0.01 mol) were taken in a round-bottomed flask containing (1.5 eq) NaH and 3 ml of acetic anhydride. The flask, fitted with a guard tube, was stirred for 1.5 h. The progress of the reaction was monitored by TLC, the solid that separated was filtered off and washed with diethyl ether and again with 5% NaHCO3 to remove unreacted 6-methyl­coumarin 4-acetic acid. Then the solid was dried and recrystallized from ethanol. Crystals suitable for diffraction studies were obtained through slow evaporation from a DMF solution.

Refinement

Crystal data, data collection and structure refinement details are summarized in Table 2 ▶. C-bound H atoms were positioned geometrically and allowed to ride on their parent atoms, with C—H = 0.93–0.98 Å and U iso(H) = 1.2U eq(C) or 1.5U eq(Cmeth­yl).
Table 2

Experimental details

Crystal data
Chemical formulaC20H14O4
M r 318.31
Crystal system, space groupTriclinic, P
Temperature (K)296
a, b, c ()7.834(1), 8.0455(9), 12.7952(15)
, , ()79.492(5), 77.096(4), 86.637(5)
V (3)772.78(16)
Z 2
Radiation typeMo K
(mm1)0.10
Crystal size (mm)0.35 0.31 0.25
 
Data collection
DiffractometerBruker SMART CCD area-detector
Absorption correctionMulti-scan (SADABS; Sheldrick, 1996)
T min, T max 0.954, 0.964
No. of measured, independent and observed [I > 2(I)] reflections12862, 3499, 2509
R int 0.027
(sin /)max (1)0.648
 
Refinement
R[F 2 > 2(F 2)], wR(F 2), S 0.046, 0.140, 1.05
No. of reflections3499
No. of parameters219
H-atom treatmentH-atom parameters constrained
max, min (e 3)0.19, 0.20

Computer programs: SMART and SAINT (Bruker, 1998 ▶), SIR92 (Altomare et al., 1993 ▶), SHELXL97 (Sheldrick, 2008 ▶), ORTEP-3 for Windows (Farrugia, 2012 ▶), CAMERON (Watkin et al., 1996 ▶), PARST (Nardelli, 1996 ▶) and PLATON (Spek, 2009 ▶).

Crystal structure: contains datablock(s) global, I. DOI: 10.1107/S1600536814021825/is5375sup1.cif Structure factors: contains datablock(s) I. DOI: 10.1107/S1600536814021825/is5375Isup2.hkl Click here for additional data file. Supporting information file. DOI: 10.1107/S1600536814021825/is5375Isup3.cml CCDC reference: 1027466 Additional supporting information: crystallographic information; 3D view; checkCIF report
C20H14O4Z = 2
Mr = 318.31F(000) = 332
Triclinic, P1Dx = 1.368 Mg m3
Hall symbol: -P 1Mo Kα radiation, λ = 0.71073 Å
a = 7.834 (1) ÅCell parameters from 560 reflections
b = 8.0455 (9) Åθ = 1.7°
c = 12.7952 (15) ŵ = 0.10 mm1
α = 79.492 (5)°T = 296 K
β = 77.096 (4)°Block, white
γ = 86.637 (5)°0.35 × 0.31 × 0.25 mm
V = 772.78 (16) Å3
Bruker SMART CCD area-detector diffractometer3499 independent reflections
Radiation source: fine-focus sealed tube2509 reflections with I > 2σ(I)
Graphite monochromatorRint = 0.027
φ and ω scansθmax = 27.4°, θmin = 1.7°
Absorption correction: multi-scan (SADABS; Sheldrick, 1996)h = −10→10
Tmin = 0.954, Tmax = 0.964k = −10→9
12862 measured reflectionsl = −16→16
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.046Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.140H-atom parameters constrained
S = 1.05w = 1/[σ2(Fo2) + (0.0661P)2 + 0.1433P] where P = (Fo2 + 2Fc2)/3
3499 reflections(Δ/σ)max < 0.001
219 parametersΔρmax = 0.19 e Å3
0 restraintsΔρmin = −0.20 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
O10.81516 (14)0.16314 (15)−0.10679 (8)0.0577 (3)
O20.9332 (2)0.4150 (2)−0.14906 (10)0.0853 (4)
O30.61479 (14)0.15867 (15)0.41223 (8)0.0569 (3)
O40.48324 (15)0.13864 (15)0.27995 (9)0.0603 (3)
C20.8773 (2)0.2996 (2)−0.07754 (13)0.0583 (4)
C30.8662 (2)0.2942 (2)0.03783 (11)0.0508 (4)
H30.90520.38630.060.061*
C40.80175 (18)0.16160 (17)0.11386 (11)0.0405 (3)
C50.6808 (2)−0.13246 (17)0.15031 (12)0.0478 (4)
H50.6783−0.14180.22420.057*
C60.6220 (2)−0.26560 (18)0.11392 (14)0.0547 (4)
C70.6262 (2)−0.2483 (2)0.00295 (15)0.0595 (5)
H70.5852−0.3356−0.02290.071*
C80.6891 (2)−0.1057 (2)−0.06922 (13)0.0560 (4)
H80.6905−0.0967−0.14290.067*
C90.75025 (18)0.0239 (2)−0.03095 (12)0.0460 (4)
C100.74384 (18)0.01530 (17)0.08010 (11)0.0414 (3)
C110.79180 (18)0.16893 (16)0.23068 (10)0.0386 (3)
C120.93182 (19)0.20659 (19)0.26592 (11)0.0450 (3)
H121.03860.22450.21650.054*
C130.92131 (19)0.21999 (17)0.37755 (11)0.0433 (3)
C141.0631 (2)0.2583 (2)0.41766 (13)0.0540 (4)
H141.17190.2770.37050.065*
C151.0449 (2)0.2688 (2)0.52638 (13)0.0572 (4)
C160.8808 (3)0.2377 (2)0.59489 (13)0.0679 (5)
H160.86690.24320.66830.081*
C170.7393 (3)0.1995 (2)0.55805 (13)0.0680 (5)
H170.63120.17880.60560.082*
C180.7602 (2)0.19221 (18)0.44840 (11)0.0472 (4)
C190.6205 (2)0.15326 (17)0.30488 (11)0.0440 (3)
C201.1984 (3)0.3134 (3)0.56865 (17)0.0830 (6)
H20A1.27980.21950.57080.124*
H20B1.15750.33860.64070.124*
H20C1.25540.41030.52140.124*
C210.5504 (3)−0.4212 (2)0.19269 (18)0.0784 (6)
H21A0.6207−0.45050.24620.118*
H21B0.5529−0.51310.15390.118*
H21C0.4319−0.39910.22820.118*
U11U22U33U12U13U23
O10.0565 (7)0.0856 (8)0.0318 (5)−0.0030 (6)−0.0070 (5)−0.0147 (5)
O20.1050 (11)0.1025 (10)0.0394 (6)−0.0284 (8)−0.0057 (7)0.0071 (7)
O30.0581 (7)0.0744 (7)0.0360 (5)−0.0229 (5)0.0050 (5)−0.0154 (5)
O40.0469 (7)0.0795 (8)0.0575 (7)−0.0158 (6)−0.0036 (5)−0.0243 (6)
C20.0556 (10)0.0799 (11)0.0365 (8)−0.0071 (8)−0.0048 (7)−0.0074 (8)
C30.0521 (9)0.0634 (9)0.0358 (7)−0.0107 (7)−0.0039 (7)−0.0101 (7)
C40.0378 (7)0.0510 (8)0.0335 (7)0.0029 (6)−0.0065 (6)−0.0118 (6)
C50.0586 (9)0.0446 (7)0.0461 (8)0.0105 (6)−0.0207 (7)−0.0154 (6)
C60.0581 (10)0.0444 (8)0.0694 (10)0.0120 (7)−0.0236 (8)−0.0224 (7)
C70.0564 (10)0.0631 (10)0.0734 (11)0.0133 (8)−0.0241 (9)−0.0415 (9)
C80.0469 (9)0.0817 (11)0.0496 (9)0.0154 (8)−0.0155 (7)−0.0367 (8)
C90.0380 (8)0.0641 (9)0.0394 (7)0.0111 (6)−0.0098 (6)−0.0204 (7)
C100.0409 (8)0.0496 (8)0.0377 (7)0.0100 (6)−0.0129 (6)−0.0162 (6)
C110.0453 (8)0.0393 (6)0.0306 (6)−0.0017 (5)−0.0050 (6)−0.0079 (5)
C120.0421 (8)0.0590 (8)0.0336 (7)0.0011 (6)−0.0030 (6)−0.0146 (6)
C130.0521 (9)0.0452 (7)0.0338 (7)0.0034 (6)−0.0103 (6)−0.0105 (6)
C140.0546 (10)0.0674 (10)0.0456 (8)0.0091 (7)−0.0174 (7)−0.0195 (7)
C150.0792 (12)0.0534 (9)0.0477 (9)0.0131 (8)−0.0316 (9)−0.0139 (7)
C160.1023 (15)0.0711 (11)0.0322 (8)−0.0038 (10)−0.0178 (9)−0.0092 (7)
C170.0863 (13)0.0816 (12)0.0322 (8)−0.0220 (10)0.0009 (8)−0.0106 (8)
C180.0623 (10)0.0451 (7)0.0328 (7)−0.0093 (7)−0.0048 (7)−0.0074 (6)
C190.0517 (9)0.0426 (7)0.0367 (7)−0.0106 (6)−0.0025 (6)−0.0101 (6)
C200.0974 (15)0.1004 (15)0.0710 (12)0.0216 (12)−0.0535 (12)−0.0306 (11)
C210.1041 (16)0.0426 (8)0.0973 (15)0.0001 (9)−0.0352 (12)−0.0189 (9)
O1—C21.370 (2)C11—C121.345 (2)
O1—C91.3805 (19)C11—C191.458 (2)
O2—C21.204 (2)C12—C131.4358 (18)
O3—C191.3728 (17)C12—H120.93
O3—C181.3793 (18)C13—C181.383 (2)
O4—C191.2055 (18)C13—C141.394 (2)
C2—C31.452 (2)C14—C151.384 (2)
C3—C41.344 (2)C14—H140.93
C3—H30.93C15—C161.392 (3)
C4—C101.4538 (18)C15—C201.509 (2)
C4—C111.4911 (17)C16—C171.368 (3)
C5—C61.383 (2)C16—H160.93
C5—C101.395 (2)C17—C181.387 (2)
C5—H50.93C17—H170.93
C6—C71.394 (2)C20—H20A0.96
C6—C211.506 (2)C20—H20B0.96
C7—C81.374 (2)C20—H20C0.96
C7—H70.93C21—H21A0.96
C8—C91.381 (2)C21—H21B0.96
C8—H80.93C21—H21C0.96
C9—C101.3997 (18)
C2—O1—C9121.88 (12)C13—C12—H12119
C19—O3—C18122.41 (11)C18—C13—C14118.92 (13)
O2—C2—O1117.52 (15)C18—C13—C12117.22 (13)
O2—C2—C3125.51 (17)C14—C13—C12123.86 (14)
O1—C2—C3116.95 (14)C15—C14—C13121.18 (16)
C4—C3—C2122.65 (14)C15—C14—H14119.4
C4—C3—H3118.7C13—C14—H14119.4
C2—C3—H3118.7C14—C15—C16117.86 (15)
C3—C4—C10119.22 (12)C14—C15—C20120.80 (17)
C3—C4—C11118.88 (12)C16—C15—C20121.34 (16)
C10—C4—C11121.90 (12)C17—C16—C15122.34 (15)
C6—C5—C10122.28 (14)C17—C16—H16118.8
C6—C5—H5118.9C15—C16—H16118.8
C10—C5—H5118.9C16—C17—C18118.71 (16)
C5—C6—C7117.80 (15)C16—C17—H17120.6
C5—C6—C21120.70 (15)C18—C17—H17120.6
C7—C6—C21121.46 (15)O3—C18—C13121.18 (12)
C8—C7—C6121.81 (14)O3—C18—C17117.84 (14)
C8—C7—H7119.1C13—C18—C17120.98 (15)
C6—C7—H7119.1O4—C19—O3117.19 (13)
C7—C8—C9119.16 (14)O4—C19—C11125.75 (13)
C7—C8—H8120.4O3—C19—C11117.05 (13)
C9—C8—H8120.4C15—C20—H20A109.5
C8—C9—O1117.05 (13)C15—C20—H20B109.5
C8—C9—C10121.36 (15)H20A—C20—H20B109.5
O1—C9—C10121.58 (13)C15—C20—H20C109.5
C5—C10—C9117.54 (13)H20A—C20—H20C109.5
C5—C10—C4124.84 (12)H20B—C20—H20C109.5
C9—C10—C4117.62 (13)C6—C21—H21A109.5
C12—C11—C19119.82 (12)C6—C21—H21B109.5
C12—C11—C4121.73 (12)H21A—C21—H21B109.5
C19—C11—C4118.09 (12)C6—C21—H21C109.5
C11—C12—C13121.94 (13)H21A—C21—H21C109.5
C11—C12—H12119H21B—C21—H21C109.5
C9—O1—C2—O2179.27 (14)C3—C4—C11—C19120.68 (15)
C9—O1—C2—C3−2.2 (2)C10—C4—C11—C19−59.32 (17)
O2—C2—C3—C4179.75 (17)C19—C11—C12—C134.7 (2)
O1—C2—C3—C41.3 (2)C4—C11—C12—C13177.64 (12)
C2—C3—C4—C101.3 (2)C11—C12—C13—C180.1 (2)
C2—C3—C4—C11−178.68 (14)C11—C12—C13—C14179.81 (13)
C10—C5—C6—C7−0.4 (2)C18—C13—C14—C15−0.1 (2)
C10—C5—C6—C21−178.33 (15)C12—C13—C14—C15−179.77 (14)
C5—C6—C7—C81.2 (2)C13—C14—C15—C160.9 (2)
C21—C6—C7—C8179.09 (15)C13—C14—C15—C20−178.91 (15)
C6—C7—C8—C90.1 (2)C14—C15—C16—C17−0.7 (3)
C7—C8—C9—O1178.84 (13)C20—C15—C16—C17179.08 (17)
C7—C8—C9—C10−2.2 (2)C15—C16—C17—C18−0.3 (3)
C2—O1—C9—C8179.28 (14)C19—O3—C18—C13−0.9 (2)
C2—O1—C9—C100.3 (2)C19—O3—C18—C17178.21 (14)
C6—C5—C10—C9−1.6 (2)C14—C13—C18—O3178.15 (13)
C6—C5—C10—C4177.80 (13)C12—C13—C18—O3−2.1 (2)
C8—C9—C10—C52.9 (2)C14—C13—C18—C17−1.0 (2)
O1—C9—C10—C5−178.19 (12)C12—C13—C18—C17178.77 (14)
C8—C9—C10—C4−176.54 (13)C16—C17—C18—O3−178.01 (15)
O1—C9—C10—C42.4 (2)C16—C17—C18—C131.1 (3)
C3—C4—C10—C5177.47 (13)C18—O3—C19—O4−173.26 (13)
C11—C4—C10—C5−2.5 (2)C18—O3—C19—C115.6 (2)
C3—C4—C10—C9−3.1 (2)C12—C11—C19—O4171.31 (14)
C11—C4—C10—C9176.86 (12)C4—C11—C19—O4−1.9 (2)
C3—C4—C11—C12−52.37 (19)C12—C11—C19—O3−7.45 (19)
C10—C4—C11—C12127.63 (15)C4—C11—C19—O3179.36 (11)
D—H···AD—HH···AD···AD—H···A
C8—H8···O4i0.932.533.330 (2)145
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Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2009-01-20
  9 in total

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