| Literature DB >> 25484726 |
Graham Smith1, Daniel E Lynch2.
Abstract
The structures of the 1:1 co-crystalline adduct C8H6BrN3S·C7H5NO4, (I), and the salt C8H7BrN3S(+)·C7H3N2O7 (-), (II), obtained from the inter-action of 5-(4-bromo-phen-yl)-1,3,4-thia-diazol-2-amine with 4-nitro-benzoic acid and 3,5-di-nitro-salicylic acid, respectively, have been determined. The primary inter-species association in both (I) and (II) is through duplex R (2) 2(8) (N-H⋯O/O-H⋯O) or (N-H⋯O/N-H⋯O) hydrogen bonds, respectively, giving heterodimers. In (II), these are close to planar [the dihedral angles between the thia-diazole ring and the two phenyl rings are 2.1 (3) (intra) and 9.8 (2)° (inter)], while in (I) these angles are 22.11 (15) and 26.08 (18)°, respectively. In the crystal of (I), the heterodimers are extended into a chain along b through an amine N-H⋯Nthia-diazole hydrogen bond but in (II), a centrosymmetric cyclic hetero-tetra-mer structure is generated through N-H⋯O hydrogen bonds to phenol and nitro O-atom acceptors and features, together with the primary R (2) 2(8) inter-action, conjoined R (4) 6(12), R (2) 1(6) and S(6) ring motifs. Also present in (I) are π-π inter-actions between thia-diazole rings [minimum ring-centroid separation = 3.4624 (16) Å], as well as short Br⋯Onitro inter-actions in both (I) and (II) [3.296 (3) and 3.104 (3) Å, respectively].Entities:
Keywords: 3,5-dinitrosalicylic acid; 4-nitrobenzoic acid; 5-substituted-2-amino-1,3,4-thiadiazoles; co-crystals; crystal structure; hydrogen bonding; molecular adducts; proton transfer; π–π interactions
Year: 2014 PMID: 25484726 PMCID: PMC4257302 DOI: 10.1107/S1600536814021138
Source DB: PubMed Journal: Acta Crystallogr Sect E Struct Rep Online ISSN: 1600-5368
Figure 1Molecular conformation and atom-numbering scheme for adduct (I), with inter-species hydrogen bonds shown as dashed lines. Non-H atoms are shown as 50% probability displacement ellipsoids.
Figure 2Molecular conformation and atom-numbering scheme for salt (II), with inter-species hydrogen bonds shown as dashed lines. Non-H atoms are shown as 50% probability displacement ellipsoids.
Hydrogen-bond geometry (, ) for (I)
|
|
| H |
|
|
|---|---|---|---|---|
| O11 | 0.90 | 1.75 | 2.648(3) | 175 |
| N21 | 0.82 | 2.04 | 2.859(4) | 172 |
| N21 | 0.92 | 2.16 | 3.052(3) | 162 |
| C55 | 0.95 | 2.47 | 3.302(4) | 146 |
Symmetry codes: (i) ; (ii) .
Figure 3A perspective view of the one-dimensional hydrogen-bonded extension in the structure of (I). Hydrogen bonds are shown as dashed lines.
Hydrogen-bond geometry (, ) for (II)
|
|
| H |
|
|
|---|---|---|---|---|
| O12 | 0.87 | 1.57 | 2.418(4) | 164 |
| N3 | 0.88 | 1.87 | 2.744(4) | 172 |
| N21 | 0.88 | 1.89 | 2.747(4) | 166 |
| N21 | 0.88 | 2.22 | 2.897(4) | 134 |
| N21 | 0.88 | 2.19 | 2.986(5) | 150 |
| C4 | 0.95 | 2.44 | 3.284(5) | 148 |
| C56 | 0.95 | 2.44 | 3.364(5) | 164 |
Symmetry codes: (i) ; (ii) ; (iii) .
Figure 4A perspective view of the centrosymmetric hydrogen-bonded heterotetramer units in the unit cell of (II), showing conjoined cyclic (12), (8), (6) and S(6) hydrogen-bonded structural motifs.
Experimental details
| (I) | (II) | |
|---|---|---|
| Crystal data | ||
| Chemical formula | C8H6BrN3SC7H5NO4 | C8H7BrN3S+C7H3N2O7 |
|
| 423.25 | 484.25 |
| Crystal system, space group | Monoclinic, | Triclinic, |
| Temperature (K) | 200 | 200 |
|
| 8.5205(6), 12.0394(7), 31.4321(18) | 5.8017(3), 10.1903(5), 15.1592(9) |
| , , () | 90, 92.982(6), 90 | 88.884(4), 82.438(5), 85.470(4) |
|
| 3220.0(3) | 885.62(8) |
|
| 8 | 2 |
| Radiation type | Mo | Mo |
| (mm1) | 2.71 | 2.49 |
| Crystal size (mm) | 0.30 0.10 0.05 | 0.25 0.20 0.18 |
| Data collection | ||
| Diffractometer | Oxford Diffraction Gemini-S CCD detector | Oxford Diffraction Gemini-S CCD detector |
| Absorption correction | Multi-scan ( | Multi-scan ( |
|
| 0.936, 0.980 | 0.903, 0.980 |
| No. of measured, independent and observed [ | 6234, 3164, 2446 | 5742, 3458, 2479 |
|
| 0.029 | 0.045 |
| (sin /)max (1) | 0.617 | 0.617 |
| Refinement | ||
|
| 0.044, 0.093, 1.05 | 0.058, 0.134, 1.08 |
| No. of reflections | 3164 | 3458 |
| No. of parameters | 226 | 263 |
| H-atom treatment | H-atom parameters constrained | H-atom parameters constrained |
| max, min (e 3) | 0.37, 0.30 | 0.78, 0.82 |
Computer programs: CrysAlis PRO (Agilent, 2013 ▶), SIR92 (Altomare et al., 1993 ▶), SHELXL97 (Sheldrick, 2008 ▶) within WinGX (Farrugia, 2012 ▶) and PLATON (Spek, 2009 ▶).
| C8H7BrN3S+·C7H3N2O7− | |
| Triclinic, | |
| Hall symbol: -P 1 | Mo |
| Cell parameters from 1277 reflections | |
| θ = 3.6–24.8° | |
| µ = 2.49 mm−1 | |
| α = 88.884 (4)° | |
| β = 82.438 (5)° | Block, yellow |
| γ = 85.470 (4)° | 0.25 × 0.20 × 0.18 mm |
| Oxford Diffraction Gemini-S CCD detector diffractometer | 3458 independent reflections |
| Radiation source: Enhance (Mo) X-ray source | 2479 reflections with |
| Graphite monochromator | |
| Detector resolution: 16.077 pixels mm-1 | θmax = 26.0°, θmin = 3.4° |
| ω scans | |
| Absorption correction: multi-scan ( | |
| 5742 measured reflections |
| Refinement on | Secondary atom site location: difference Fourier map |
| Least-squares matrix: full | Hydrogen site location: inferred from neighbouring sites |
| H-atom parameters constrained | |
| (Δ/σ)max < 0.001 | |
| 3458 reflections | Δρmax = 0.78 e Å−3 |
| 263 parameters | Δρmin = −0.82 e Å−3 |
| 0 restraints | Extinction correction: |
| Primary atom site location: structure-invariant direct methods | Extinction coefficient: 0.042 (3) |
| Geometry. Bond distances, angles |
| Refinement. Refinement of |
| O2A | 0.1351 (5) | 0.6524 (3) | 0.0207 (2) | 0.0330 (9) | |
| O11A | −0.0271 (5) | 0.3833 (3) | 0.2158 (2) | 0.0373 (10) | |
| O12A | 0.2276 (5) | 0.4583 (3) | 0.1075 (2) | 0.0374 (10) | |
| O31A | −0.0556 (5) | 0.8407 (3) | −0.0818 (2) | 0.0360 (10) | |
| O32A | −0.2559 (5) | 0.9897 (3) | 0.0027 (2) | 0.0367 (10) | |
| O51A | −0.8459 (5) | 0.8277 (3) | 0.2177 (2) | 0.0434 (11) | |
| O52A | −0.7757 (5) | 0.6493 (3) | 0.2912 (2) | 0.0447 (11) | |
| N3A | −0.1754 (6) | 0.8761 (4) | −0.0119 (2) | 0.0298 (11) | |
| N5A | −0.7202 (6) | 0.7301 (4) | 0.2328 (2) | 0.0314 (12) | |
| C1A | −0.1349 (7) | 0.5803 (4) | 0.1393 (3) | 0.0245 (12) | |
| C2A | −0.0684 (7) | 0.6698 (4) | 0.0697 (3) | 0.0255 (12) | |
| C3A | −0.2287 (7) | 0.7776 (4) | 0.0571 (3) | 0.0256 (12) | |
| C4A | −0.4397 (7) | 0.7983 (4) | 0.1105 (3) | 0.0248 (12) | |
| C5A | −0.4948 (7) | 0.7078 (4) | 0.1777 (3) | 0.0251 (12) | |
| C6A | −0.3473 (7) | 0.5999 (4) | 0.1929 (3) | 0.0274 (12) | |
| C11A | 0.0285 (7) | 0.4637 (4) | 0.1578 (3) | 0.0294 (14) | |
| Br1B | 0.60639 (11) | −0.41426 (5) | 0.59418 (3) | 0.0574 (2) | |
| S1B | 0.68942 (18) | 0.05777 (11) | 0.23777 (7) | 0.0314 (3) | |
| N3B | 0.2976 (6) | 0.1838 (3) | 0.2484 (2) | 0.0288 (11) | |
| N4B | 0.2693 (6) | 0.0962 (3) | 0.3171 (2) | 0.0303 (11) | |
| N21B | 0.5551 (6) | 0.2544 (3) | 0.1290 (2) | 0.0346 (11) | |
| C2B | 0.5050 (7) | 0.1784 (4) | 0.1978 (3) | 0.0267 (12) | |
| C5B | 0.4588 (7) | 0.0224 (4) | 0.3197 (3) | 0.0289 (12) | |
| C51B | 0.4894 (7) | −0.0828 (4) | 0.3850 (3) | 0.0289 (12) | |
| C52B | 0.3110 (8) | −0.1094 (5) | 0.4517 (3) | 0.0383 (17) | |
| C53B | 0.3431 (9) | −0.2075 (5) | 0.5136 (3) | 0.0433 (17) | |
| C54B | 0.5553 (9) | −0.2817 (4) | 0.5088 (3) | 0.0368 (14) | |
| C55B | 0.7313 (9) | −0.2594 (5) | 0.4423 (3) | 0.0420 (17) | |
| C56B | 0.6997 (8) | −0.1610 (5) | 0.3807 (3) | 0.0386 (17) | |
| H4A | −0.54410 | 0.87240 | 0.10140 | 0.0300* | |
| H6A | −0.39030 | 0.53950 | 0.23950 | 0.0330* | |
| H12A | 0.22100 | 0.52990 | 0.07550 | 0.0560* | |
| H3B | 0.18380 | 0.24180 | 0.23770 | 0.0350* | |
| H21B | 0.44930 | 0.31390 | 0.11350 | 0.0410* | |
| H22B | 0.69490 | 0.24630 | 0.09820 | 0.0410* | |
| H52B | 0.16500 | −0.05930 | 0.45460 | 0.0460* | |
| H53B | 0.22040 | −0.22440 | 0.55940 | 0.0520* | |
| H55B | 0.87510 | −0.31180 | 0.43860 | 0.0500* | |
| H56B | 0.82260 | −0.14590 | 0.33460 | 0.0460* |
| O2A | 0.0266 (15) | 0.0346 (17) | 0.0350 (17) | 0.0035 (14) | 0.0012 (13) | 0.0106 (13) |
| O11A | 0.0373 (17) | 0.0299 (17) | 0.0412 (19) | 0.0067 (15) | −0.0001 (15) | 0.0131 (14) |
| O12A | 0.0308 (17) | 0.0316 (17) | 0.047 (2) | 0.0054 (14) | −0.0018 (15) | 0.0162 (14) |
| O31A | 0.0378 (17) | 0.0395 (18) | 0.0287 (17) | 0.0007 (15) | −0.0014 (14) | 0.0122 (14) |
| O32A | 0.0308 (16) | 0.0224 (16) | 0.054 (2) | 0.0070 (14) | −0.0025 (15) | 0.0143 (14) |
| O51A | 0.0361 (18) | 0.0377 (19) | 0.050 (2) | 0.0159 (16) | 0.0058 (15) | 0.0097 (16) |
| O52A | 0.0409 (18) | 0.043 (2) | 0.044 (2) | 0.0024 (16) | 0.0115 (15) | 0.0174 (16) |
| N3A | 0.0237 (19) | 0.033 (2) | 0.033 (2) | −0.0017 (17) | −0.0063 (17) | 0.0097 (17) |
| N5A | 0.030 (2) | 0.029 (2) | 0.033 (2) | 0.0013 (18) | 0.0012 (17) | 0.0010 (17) |
| C1A | 0.027 (2) | 0.019 (2) | 0.028 (2) | −0.0007 (18) | −0.0072 (18) | 0.0040 (17) |
| C2A | 0.025 (2) | 0.025 (2) | 0.026 (2) | 0.0018 (19) | −0.0040 (18) | 0.0008 (18) |
| C3A | 0.027 (2) | 0.023 (2) | 0.027 (2) | −0.0026 (19) | −0.0055 (18) | 0.0093 (17) |
| C4A | 0.024 (2) | 0.022 (2) | 0.028 (2) | 0.0045 (18) | −0.0065 (18) | 0.0022 (17) |
| C5A | 0.023 (2) | 0.026 (2) | 0.025 (2) | 0.0037 (18) | −0.0018 (17) | −0.0022 (17) |
| C6A | 0.029 (2) | 0.025 (2) | 0.028 (2) | −0.0007 (19) | −0.0041 (18) | 0.0049 (18) |
| C11A | 0.028 (2) | 0.026 (2) | 0.034 (3) | 0.002 (2) | −0.006 (2) | 0.001 (2) |
| Br1B | 0.0977 (5) | 0.0413 (3) | 0.0352 (3) | −0.0111 (3) | −0.0151 (3) | 0.0174 (2) |
| S1B | 0.0254 (6) | 0.0321 (6) | 0.0341 (6) | 0.0043 (5) | 0.0000 (5) | 0.0122 (5) |
| N3B | 0.0258 (19) | 0.0265 (19) | 0.032 (2) | 0.0067 (16) | −0.0026 (16) | 0.0086 (15) |
| N4B | 0.0283 (19) | 0.033 (2) | 0.028 (2) | 0.0002 (17) | 0.0002 (16) | 0.0068 (16) |
| N21B | 0.0259 (19) | 0.034 (2) | 0.041 (2) | 0.0075 (17) | −0.0015 (17) | 0.0154 (17) |
| C2B | 0.026 (2) | 0.023 (2) | 0.031 (2) | −0.0013 (19) | −0.0047 (19) | 0.0041 (18) |
| C5B | 0.031 (2) | 0.028 (2) | 0.027 (2) | −0.002 (2) | −0.0016 (18) | 0.0031 (18) |
| C51B | 0.032 (2) | 0.031 (2) | 0.024 (2) | −0.007 (2) | −0.0022 (18) | 0.0031 (18) |
| C52B | 0.038 (3) | 0.039 (3) | 0.036 (3) | 0.002 (2) | −0.001 (2) | 0.000 (2) |
| C53B | 0.048 (3) | 0.048 (3) | 0.032 (3) | −0.011 (3) | 0.005 (2) | 0.007 (2) |
| C54B | 0.059 (3) | 0.028 (2) | 0.025 (2) | −0.009 (2) | −0.009 (2) | 0.0066 (19) |
| C55B | 0.047 (3) | 0.035 (3) | 0.042 (3) | 0.006 (2) | −0.006 (2) | 0.013 (2) |
| C56B | 0.038 (3) | 0.041 (3) | 0.033 (3) | 0.003 (2) | 0.004 (2) | 0.015 (2) |
| Br1B—C54B | 1.886 (4) | C1A—C6A | 1.387 (6) |
| S1B—C5B | 1.756 (4) | C1A—C11A | 1.506 (6) |
| S1B—C2B | 1.720 (4) | C1A—C2A | 1.416 (6) |
| O2A—C2A | 1.311 (5) | C2A—C3A | 1.409 (6) |
| O11A—C11A | 1.220 (5) | C3A—C4A | 1.380 (6) |
| O12A—C11A | 1.296 (5) | C4A—C5A | 1.384 (6) |
| O31A—N3A | 1.232 (4) | C5A—C6A | 1.374 (6) |
| O32A—N3A | 1.227 (5) | C4A—H4A | 0.9500 |
| O51A—N5A | 1.222 (5) | C6A—H6A | 0.9500 |
| O52A—N5A | 1.226 (5) | C5B—C51B | 1.461 (6) |
| O12A—H12A | 0.8700 | C51B—C56B | 1.398 (6) |
| N3A—C3A | 1.456 (6) | C51B—C52B | 1.388 (6) |
| N5A—C5A | 1.460 (5) | C52B—C53B | 1.376 (7) |
| N3B—C2B | 1.337 (5) | C53B—C54B | 1.387 (7) |
| N3B—N4B | 1.360 (4) | C54B—C55B | 1.367 (7) |
| N4B—C5B | 1.287 (5) | C55B—C56B | 1.375 (7) |
| N21B—C2B | 1.302 (5) | C52B—H52B | 0.9500 |
| N3B—H3B | 0.8800 | C53B—H53B | 0.9500 |
| N21B—H22B | 0.8800 | C55B—H55B | 0.9500 |
| N21B—H21B | 0.8800 | C56B—H56B | 0.9500 |
| C2B—S1B—C5B | 88.1 (2) | O11A—C11A—O12A | 124.5 (4) |
| C11A—O12A—H12A | 104.00 | O11A—C11A—C1A | 121.4 (4) |
| O32A—N3A—C3A | 117.7 (3) | C3A—C4A—H4A | 121.00 |
| O31A—N3A—O32A | 123.8 (4) | C5A—C4A—H4A | 121.00 |
| O31A—N3A—C3A | 118.5 (4) | C5A—C6A—H6A | 120.00 |
| O51A—N5A—C5A | 118.3 (3) | C1A—C6A—H6A | 120.00 |
| O51A—N5A—O52A | 123.1 (3) | S1B—C2B—N3B | 109.7 (3) |
| O52A—N5A—C5A | 118.5 (4) | S1B—C2B—N21B | 126.3 (3) |
| N4B—N3B—C2B | 117.4 (3) | N3B—C2B—N21B | 124.0 (4) |
| N3B—N4B—C5B | 110.0 (3) | S1B—C5B—N4B | 114.8 (3) |
| C2B—N3B—H3B | 121.00 | N4B—C5B—C51B | 124.5 (4) |
| N4B—N3B—H3B | 121.00 | S1B—C5B—C51B | 120.7 (3) |
| C2B—N21B—H21B | 120.00 | C5B—C51B—C56B | 120.4 (4) |
| H21B—N21B—H22B | 120.00 | C52B—C51B—C56B | 118.2 (4) |
| C2B—N21B—H22B | 120.00 | C5B—C51B—C52B | 121.3 (4) |
| C2A—C1A—C11A | 120.1 (4) | C51B—C52B—C53B | 120.8 (4) |
| C6A—C1A—C11A | 118.9 (4) | C52B—C53B—C54B | 119.7 (4) |
| C2A—C1A—C6A | 121.0 (4) | Br1B—C54B—C53B | 120.6 (4) |
| C1A—C2A—C3A | 117.0 (4) | C53B—C54B—C55B | 120.5 (4) |
| O2A—C2A—C3A | 122.4 (4) | Br1B—C54B—C55B | 118.9 (4) |
| O2A—C2A—C1A | 120.6 (4) | C54B—C55B—C56B | 119.8 (5) |
| N3A—C3A—C2A | 121.2 (4) | C51B—C56B—C55B | 121.0 (4) |
| N3A—C3A—C4A | 116.4 (4) | C51B—C52B—H52B | 120.00 |
| C2A—C3A—C4A | 122.4 (4) | C53B—C52B—H52B | 120.00 |
| C3A—C4A—C5A | 118.0 (4) | C52B—C53B—H53B | 120.00 |
| N5A—C5A—C4A | 117.3 (4) | C54B—C53B—H53B | 120.00 |
| N5A—C5A—C6A | 120.2 (4) | C54B—C55B—H55B | 120.00 |
| C4A—C5A—C6A | 122.4 (4) | C56B—C55B—H55B | 120.00 |
| C1A—C6A—C5A | 119.2 (4) | C51B—C56B—H56B | 120.00 |
| O12A—C11A—C1A | 114.2 (4) | C55B—C56B—H56B | 119.00 |
| C2B—S1B—C5B—C51B | 179.2 (4) | C11A—C1A—C6A—C5A | 178.5 (4) |
| C2B—S1B—C5B—N4B | −1.5 (3) | O2A—C2A—C3A—N3A | 0.1 (6) |
| C5B—S1B—C2B—N3B | 1.5 (3) | O2A—C2A—C3A—C4A | −177.8 (4) |
| C5B—S1B—C2B—N21B | −178.6 (4) | C1A—C2A—C3A—C4A | 1.3 (6) |
| O32A—N3A—C3A—C2A | −147.8 (4) | C1A—C2A—C3A—N3A | 179.2 (4) |
| O31A—N3A—C3A—C4A | −148.7 (4) | C2A—C3A—C4A—C5A | −1.1 (6) |
| O32A—N3A—C3A—C4A | 30.3 (5) | N3A—C3A—C4A—C5A | −179.0 (4) |
| O31A—N3A—C3A—C2A | 33.3 (6) | C3A—C4A—C5A—N5A | −179.1 (4) |
| O51A—N5A—C5A—C4A | −1.1 (6) | C3A—C4A—C5A—C6A | 0.3 (6) |
| O51A—N5A—C5A—C6A | 179.5 (4) | C4A—C5A—C6A—C1A | 0.1 (7) |
| O52A—N5A—C5A—C4A | 178.0 (4) | N5A—C5A—C6A—C1A | 179.5 (4) |
| O52A—N5A—C5A—C6A | −1.5 (6) | S1B—C5B—C51B—C52B | 178.1 (4) |
| N4B—N3B—C2B—N21B | 178.7 (4) | S1B—C5B—C51B—C56B | −3.0 (6) |
| C2B—N3B—N4B—C5B | 0.3 (5) | N4B—C5B—C51B—C52B | −1.1 (7) |
| N4B—N3B—C2B—S1B | −1.4 (4) | N4B—C5B—C51B—C56B | 177.8 (4) |
| N3B—N4B—C5B—C51B | −179.8 (4) | C5B—C51B—C52B—C53B | −179.1 (4) |
| N3B—N4B—C5B—S1B | 0.9 (4) | C56B—C51B—C52B—C53B | 2.0 (7) |
| C6A—C1A—C2A—C3A | −0.8 (6) | C5B—C51B—C56B—C55B | 179.3 (4) |
| C6A—C1A—C2A—O2A | 178.3 (4) | C52B—C51B—C56B—C55B | −1.7 (7) |
| C2A—C1A—C6A—C5A | 0.2 (6) | C51B—C52B—C53B—C54B | −0.7 (7) |
| C11A—C1A—C2A—O2A | 0.0 (6) | C52B—C53B—C54B—Br1B | 178.7 (4) |
| C11A—C1A—C2A—C3A | −179.1 (4) | C52B—C53B—C54B—C55B | −1.0 (7) |
| C2A—C1A—C11A—O11A | −178.0 (4) | Br1B—C54B—C55B—C56B | −178.4 (4) |
| C2A—C1A—C11A—O12A | 2.2 (6) | C53B—C54B—C55B—C56B | 1.3 (7) |
| C6A—C1A—C11A—O11A | 3.7 (6) | C54B—C55B—C56B—C51B | 0.1 (7) |
| C6A—C1A—C11A—O12A | −176.2 (4) |
| H··· | ||||
| O12 | 0.87 | 1.57 | 2.418 (4) | 164 |
| N3 | 0.88 | 1.87 | 2.744 (4) | 172 |
| N21 | 0.88 | 1.89 | 2.747 (4) | 166 |
| N21 | 0.88 | 2.22 | 2.897 (4) | 134 |
| N21 | 0.88 | 2.19 | 2.986 (5) | 150 |
| C4 | 0.95 | 2.44 | 3.284 (5) | 148 |
| C56 | 0.95 | 2.44 | 3.364 (5) | 164 |
| C56 | 0.95 | 2.64 | 3.081 (5) | 109 |