Literature DB >> 21583266

5-(3-Fluoro-phen-yl)-1,3,4-thia-diazol-2-amine.

Yao Wang1, Rong Wan, Feng Han, Peng Wang.   

Abstract

The title compound, C(8)H(6)FN(3)S, was synthesized by the reaction of 3-fluoro-benzoic acid and thio-semicarbazide. The dihedral angle between the planes of the thia-diazole and benzene rings is 37.3 (2)°. In the structure, two crystallographically independent mol-ecules form a centrosymmetric dimer, in which two inter-molecular N-H⋯N hydrogen bonds generate an R(2) (2)(8) motif.

Entities:  

Year:  2009        PMID: 21583266      PMCID: PMC2969772          DOI: 10.1107/S1600536809019333

Source DB:  PubMed          Journal:  Acta Crystallogr Sect E Struct Rep Online        ISSN: 1600-5368


Related literature

For the biological activity of 1,3,4-thiadiazole derivatives, see: Nakagawa et al. (1996 ▶); Wang et al. (1999 ▶). For a similar structure, see: Wan et al. (2006 ▶). For bond-length data, see: Allen et al. (1987 ▶).

Experimental

Crystal data

C8H6FN3S M = 195.23 Monoclinic, a = 11.345 (2) Å b = 7.3130 (15) Å c = 11.269 (2) Å β = 111.64 (3)° V = 869.0 (3) Å3 Z = 4 Mo Kα radiation μ = 0.34 mm−1 T = 293 K 0.20 × 0.10 × 0.10 mm

Data collection

Enraf–Nonius CAD-4 diffractometer Absorption correction: ψ scan (North et al., 1968 ▶) T min = 0.935, T max = 0.967 1667 measured reflections 1584 independent reflections 1177 reflections with I > 2σ(I) R int = 0.021 3 standard reflections every 200 reflections intensity decay: 1%

Refinement

R[F 2 > 2σ(F 2)] = 0.047 wR(F 2) = 0.124 S = 1.01 1584 reflections 118 parameters 13 restraints H-atom parameters constrained Δρmax = 0.37 e Å−3 Δρmin = −0.25 e Å−3 Data collection: CAD-4 Software (Enraf–Nonius, 1989 ▶); cell refinement: CAD-4 Software; data reduction: XCAD4 (Harms & Wocadlo, 1995 ▶); program(s) used to solve structure: SHELXS97 (Sheldrick, 2008 ▶); program(s) used to refine structure: SHELXL97 (Sheldrick, 2008 ▶); molecular graphics: SHELXTL (Sheldrick, 2008 ▶); software used to prepare material for publication: SHELXL97. Crystal structure: contains datablocks global, I. DOI: 10.1107/S1600536809019333/at2787sup1.cif Structure factors: contains datablocks I. DOI: 10.1107/S1600536809019333/at2787Isup2.hkl Additional supplementary materials: crystallographic information; 3D view; checkCIF report
C8H6FN3SF(000) = 400
Mr = 195.23Dx = 1.492 Mg m3
Monoclinic, P21/cMelting point: 515 K
Hall symbol: -P 2ybcMo Kα radiation, λ = 0.71073 Å
a = 11.345 (2) ÅCell parameters from 25 reflections
b = 7.3130 (15) Åθ = 10–13°
c = 11.269 (2) ŵ = 0.34 mm1
β = 111.64 (3)°T = 293 K
V = 869.0 (3) Å3Block, colourless
Z = 40.20 × 0.10 × 0.10 mm
Enraf–Nonius CAD-4 diffractometer1177 reflections with I > 2σ(I)
Radiation source: fine-focus sealed tubeRint = 0.021
graphiteθmax = 25.3°, θmin = 1.9°
ω/2θ scansh = −13→0
Absorption correction: ψ scan (North et al., 1968)k = 0→8
Tmin = 0.935, Tmax = 0.967l = −12→13
1667 measured reflections3 standard reflections every 200 reflections
1584 independent reflections intensity decay: 1%
Refinement on F2Primary atom site location: structure-invariant direct methods
Least-squares matrix: fullSecondary atom site location: difference Fourier map
R[F2 > 2σ(F2)] = 0.047Hydrogen site location: inferred from neighbouring sites
wR(F2) = 0.124H-atom parameters constrained
S = 1.01w = 1/[σ2(Fo2) + (0.06P)2] where P = (Fo2 + 2Fc2)/3
1584 reflections(Δ/σ)max < 0.001
118 parametersΔρmax = 0.37 e Å3
13 restraintsΔρmin = −0.25 e Å3
Geometry. All e.s.d.'s (except the e.s.d. in the dihedral angle between two l.s. planes) are estimated using the full covariance matrix. The cell e.s.d.'s are taken into account individually in the estimation of e.s.d.'s in distances, angles and torsion angles; correlations between e.s.d.'s in cell parameters are only used when they are defined by crystal symmetry. An approximate (isotropic) treatment of cell e.s.d.'s is used for estimating e.s.d.'s involving l.s. planes.
Refinement. Refinement of F2 against ALL reflections. The weighted R-factor wR and goodness of fit S are based on F2, conventional R-factors R are based on F, with F set to zero for negative F2. The threshold expression of F2 > σ(F2) is used only for calculating R-factors(gt) etc. and is not relevant to the choice of reflections for refinement. R-factors based on F2 are statistically about twice as large as those based on F, and R- factors based on ALL data will be even larger.
xyzUiso*/Ueq
S0.82144 (7)0.08639 (11)0.55908 (6)0.0548 (3)
F0.5162 (3)−0.2428 (3)0.0198 (2)0.1125 (9)
N10.8658 (2)0.1443 (3)0.3566 (2)0.0523 (6)
C10.7322 (3)−0.2918 (5)0.3984 (3)0.0713 (9)
H1B0.7804−0.30360.48500.086*
N20.9262 (2)0.2841 (3)0.4381 (2)0.0551 (6)
C20.6592 (4)−0.4354 (5)0.3322 (4)0.0817 (11)
H2B0.6585−0.54430.37460.098*
N30.9606 (3)0.3931 (4)0.6429 (2)0.0733 (9)
H3A1.00430.48460.63400.088*
H3B0.94810.37870.71310.088*
C30.5871 (4)−0.4202 (5)0.2040 (4)0.0822 (12)
H3C0.5378−0.51750.15920.099*
C40.5898 (3)−0.2597 (6)0.1447 (3)0.0741 (10)
C50.6637 (3)−0.1132 (4)0.2071 (3)0.0639 (9)
H5A0.6658−0.00660.16280.077*
C60.7338 (3)−0.1272 (4)0.3350 (3)0.0516 (7)
C70.8082 (3)0.0307 (4)0.4039 (2)0.0475 (7)
C80.9121 (3)0.2733 (4)0.5476 (2)0.0499 (7)
U11U22U33U12U13U23
S0.0686 (5)0.0626 (5)0.0402 (4)−0.0130 (4)0.0282 (3)0.0002 (3)
F0.1200 (19)0.122 (2)0.0888 (16)−0.0253 (16)0.0307 (14)−0.0193 (15)
N10.0646 (15)0.0583 (14)0.0421 (12)−0.0113 (12)0.0293 (11)−0.0079 (11)
C10.070 (2)0.068 (2)0.073 (2)−0.0121 (18)0.0235 (17)0.0023 (18)
N20.0753 (16)0.0580 (15)0.0433 (12)−0.0172 (13)0.0353 (12)−0.0097 (11)
C20.074 (2)0.060 (2)0.112 (3)−0.0081 (19)0.035 (2)0.001 (2)
N30.110 (2)0.0800 (19)0.0452 (14)−0.0379 (17)0.0462 (15)−0.0191 (13)
C30.074 (2)0.079 (3)0.104 (3)−0.020 (2)0.045 (2)−0.040 (2)
C40.075 (2)0.091 (3)0.062 (2)−0.024 (2)0.0319 (18)−0.0344 (19)
C50.075 (2)0.068 (2)0.0514 (17)−0.0144 (17)0.0271 (16)−0.0140 (16)
C60.0557 (17)0.0533 (17)0.0519 (16)0.0000 (13)0.0270 (14)−0.0051 (13)
C70.0541 (16)0.0513 (16)0.0421 (14)0.0000 (13)0.0236 (13)−0.0013 (12)
C80.0634 (18)0.0556 (17)0.0374 (13)−0.0068 (14)0.0265 (13)−0.0025 (13)
S—C81.744 (3)C2—H2B0.9300
S—C71.747 (3)N3—C81.338 (3)
F—C41.351 (4)N3—H3A0.8600
N1—C71.288 (3)N3—H3B0.8600
N1—N21.377 (3)C3—C41.357 (5)
C1—C21.375 (5)C3—H3C0.9300
C1—C61.403 (4)C4—C51.382 (4)
C1—H1B0.9300C5—C61.369 (4)
N2—C81.303 (3)C5—H5A0.9300
C2—C31.378 (5)C6—C71.472 (4)
C8—S—C786.76 (13)F—C4—C3118.3 (3)
C7—N1—N2114.0 (2)F—C4—C5119.0 (4)
C2—C1—C6119.8 (3)C3—C4—C5122.7 (3)
C2—C1—H1B120.1C6—C5—C4119.0 (3)
C6—C1—H1B120.1C6—C5—H5A120.5
C8—N2—N1112.5 (2)C4—C5—H5A120.5
C1—C2—C3120.9 (4)C5—C6—C1119.3 (3)
C1—C2—H2B119.6C5—C6—C7119.6 (3)
C3—C2—H2B119.6C1—C6—C7121.1 (3)
C8—N3—H3A120.0N1—C7—C6124.6 (2)
C8—N3—H3B120.0N1—C7—S113.2 (2)
H3A—N3—H3B120.0C6—C7—S122.1 (2)
C4—C3—C2118.3 (3)N2—C8—N3124.3 (3)
C4—C3—H3C120.9N2—C8—S113.5 (2)
C2—C3—H3C120.9N3—C8—S122.19 (19)
C7—N1—N2—C8−0.2 (4)N2—N1—C7—S0.5 (3)
C6—C1—C2—C3−0.1 (5)C5—C6—C7—N1−36.0 (4)
C1—C2—C3—C4−0.1 (6)C1—C6—C7—N1144.6 (3)
C2—C3—C4—F−178.1 (3)C5—C6—C7—S141.4 (3)
C2—C3—C4—C51.3 (6)C1—C6—C7—S−37.9 (4)
F—C4—C5—C6177.0 (3)C8—S—C7—N1−0.4 (2)
C3—C4—C5—C6−2.4 (5)C8—S—C7—C6−178.2 (2)
C4—C5—C6—C12.2 (5)N1—N2—C8—N3−179.5 (3)
C4—C5—C6—C7−177.2 (3)N1—N2—C8—S−0.1 (3)
C2—C1—C6—C5−1.0 (5)C7—S—C8—N20.3 (2)
C2—C1—C6—C7178.4 (3)C7—S—C8—N3179.7 (3)
N2—N1—C7—C6178.1 (2)
D—H···AD—HH···AD···AD—H···A
N3—H3A···N2i0.862.142.981 (5)165
Table 1

Hydrogen-bond geometry (Å, °)

D—H⋯AD—HH⋯ADAD—H⋯A
N3—H3A⋯N2i0.862.142.981 (5)165

Symmetry code: (i) .

  1 in total

1.  A short history of SHELX.

Authors:  George M Sheldrick
Journal:  Acta Crystallogr A       Date:  2007-12-21       Impact factor: 2.290

  1 in total
  2 in total

1.  N,N-Bis(2,6-difluoro-benz-yl)-1,3,4-thia-diazol-2-amine.

Authors:  Hoong-Kun Fun; Wei-Ching Liew; B Chandrakantha; Arun M Isloor
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2009-08-15

2.  Crystal structures of the co-crystalline adduct 5-(4-bromo-phen-yl)-1,3,4-thia-diazol-2-amine-4-nitro-benzoic acid (1/1) and the salt 2-amino-5-(4-bromo-phen-yl)-1,3,4-thia-diazol-3-ium 2-carb-oxy-4,6-di-nitro-phenolate.

Authors:  Graham Smith; Daniel E Lynch
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2014-10-04
  2 in total

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