Literature DB >> 25484204

Structure of a bacterial microcompartment shell protein bound to a cobalamin cofactor.

Michael C Thompson1, Christopher S Crowley2, Jeffrey Kopstein3, Thomas A Bobik4, Todd O Yeates1.   

Abstract

The EutL shell protein is a key component of the ethanolamine-utilization microcompartment, which serves to compartmentalize ethanolamine degradation in diverse bacteria. The apparent function of this shell protein is to facilitate the selective diffusion of large cofactor molecules between the cytoplasm and the lumen of the microcompartment. While EutL is implicated in molecular-transport phenomena, the details of its function, including the identity of its transport substrate, remain unknown. Here, the 2.1 Å resolution X-ray crystal structure of a EutL shell protein bound to cobalamin (vitamin B12) is presented and the potential relevance of the observed protein-ligand interaction is briefly discussed. This work represents the first structure of a bacterial microcompartment shell protein bound to a potentially relevant cofactor molecule.

Entities:  

Keywords:  Clostridium perfringens; EutL shell protein; bacterial microcompartments

Mesh:

Substances:

Year:  2014        PMID: 25484204      PMCID: PMC4259218          DOI: 10.1107/S2053230X1402158X

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.056


  31 in total

1.  Protein structures forming the shell of primitive bacterial organelles.

Authors:  Cheryl A Kerfeld; Michael R Sawaya; Shiho Tanaka; Chau V Nguyen; Martin Phillips; Morgan Beeby; Todd O Yeates
Journal:  Science       Date:  2005-08-05       Impact factor: 47.728

2.  Crystal structure of the EutL shell protein of the ethanolamine ammonia lyase microcompartment.

Authors:  Martin Sagermann; Akashi Ohtaki; Kiel Nikolakakis
Journal:  Proc Natl Acad Sci U S A       Date:  2009-05-18       Impact factor: 11.205

Review 3.  Protein-based organelles in bacteria: carboxysomes and related microcompartments.

Authors:  Todd O Yeates; Cheryl A Kerfeld; Sabine Heinhorst; Gordon C Cannon; Jessup M Shively
Journal:  Nat Rev Microbiol       Date:  2008-09       Impact factor: 60.633

Review 4.  Eut bacterial microcompartments: insights into their function, structure, and bioengineering applications.

Authors:  Mark Held; Maureen B Quin; Claudia Schmidt-Dannert
Journal:  J Mol Microbiol Biotechnol       Date:  2013-08-05

5.  The 17-gene ethanolamine (eut) operon of Salmonella typhimurium encodes five homologues of carboxysome shell proteins.

Authors:  E Kofoid; C Rappleye; I Stojiljkovic; J Roth
Journal:  J Bacteriol       Date:  1999-09       Impact factor: 3.490

6.  Evidence that a B12-adenosyl transferase is encoded within the ethanolamine operon of Salmonella enterica.

Authors:  David E Sheppard; Joseph T Penrod; Thomas Bobik; Eric Kofoid; John R Roth
Journal:  J Bacteriol       Date:  2004-11       Impact factor: 3.490

7.  Conserving a volatile metabolite: a role for carboxysome-like organelles in Salmonella enterica.

Authors:  Joseph T Penrod; John R Roth
Journal:  J Bacteriol       Date:  2006-04       Impact factor: 3.490

8.  Microcompartments for B12-dependent 1,2-propanediol degradation provide protection from DNA and cellular damage by a reactive metabolic intermediate.

Authors:  Edith M Sampson; Thomas A Bobik
Journal:  J Bacteriol       Date:  2008-02-22       Impact factor: 3.490

9.  Vitamin B12 transport proteins: crystallographic analysis of beta-axial ligand substitutions in cobalamin bound to transcobalamin.

Authors:  Jochen Wuerges; Silvano Geremia; Sergey N Fedosov; Lucio Randaccio
Journal:  IUBMB Life       Date:  2007-11       Impact factor: 3.885

Review 10.  Bacterial microcompartments: their properties and paradoxes.

Authors:  Shouqiang Cheng; Yu Liu; Christopher S Crowley; Todd O Yeates; Thomas A Bobik
Journal:  Bioessays       Date:  2008-11       Impact factor: 4.345

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  12 in total

1.  An allosteric model for control of pore opening by substrate binding in the EutL microcompartment shell protein.

Authors:  Michael C Thompson; Duilio Cascio; David J Leibly; Todd O Yeates
Journal:  Protein Sci       Date:  2015-03-31       Impact factor: 6.725

2.  Microfocus diffraction from different regions of a protein crystal: structural variations and unit-cell polymorphism.

Authors:  Michael C Thompson; Duilio Cascio; Todd O Yeates
Journal:  Acta Crystallogr D Struct Biol       Date:  2018-04-24       Impact factor: 7.652

Review 3.  Bacterial microcompartments: widespread prokaryotic organelles for isolation and optimization of metabolic pathways.

Authors:  Thomas A Bobik; Brent P Lehman; Todd O Yeates
Journal:  Mol Microbiol       Date:  2015-08-03       Impact factor: 3.501

4.  A Bacterial Microcompartment Is Used for Choline Fermentation by Escherichia coli 536.

Authors:  Taylor I Herring; Tiffany N Harris; Chiranjit Chowdhury; Sujit Kumar Mohanty; Thomas A Bobik
Journal:  J Bacteriol       Date:  2018-04-24       Impact factor: 3.490

5.  Localization of proteins to the 1,2-propanediol utilization microcompartment by non-native signal sequences is mediated by a common hydrophobic motif.

Authors:  Christopher M Jakobson; Edward Y Kim; Marilyn F Slininger; Alex Chien; Danielle Tullman-Ercek
Journal:  J Biol Chem       Date:  2015-08-17       Impact factor: 5.157

6.  Genome-Wide Mutagenesis Identifies Factors Involved in Enterococcus faecalis Vaginal Adherence and Persistence.

Authors:  Norhan Alhajjar; Anushila Chatterjee; Brady L Spencer; Lindsey R Burcham; Julia L E Willett; Gary M Dunny; Breck A Duerkop; Kelly S Doran
Journal:  Infect Immun       Date:  2020-09-18       Impact factor: 3.441

Review 7.  Advances in the World of Bacterial Microcompartments.

Authors:  Andrew M Stewart; Katie L Stewart; Todd O Yeates; Thomas A Bobik
Journal:  Trends Biochem Sci       Date:  2021-01-11       Impact factor: 13.807

8.  Structural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartments.

Authors:  Jessica M Ochoa; Oscar Mijares; Andrea A Acosta; Xavier Escoto; Nancy Leon-Rivera; Joanna D Marshall; Michael R Sawaya; Todd O Yeates
Journal:  Acta Crystallogr F Struct Biol Commun       Date:  2021-08-24       Impact factor: 1.072

Review 9.  Recent structural insights into bacterial microcompartment shells.

Authors:  Jessica M Ochoa; Todd O Yeates
Journal:  Curr Opin Microbiol       Date:  2021-05-28       Impact factor: 7.584

Review 10.  Ethanolamine Utilization in Bacteria.

Authors:  Karan Gautam Kaval; Danielle A Garsin
Journal:  MBio       Date:  2018-02-20       Impact factor: 7.867

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