Literature DB >> 34473104

Structural characterization of hexameric shell proteins from two types of choline-utilization bacterial microcompartments.

Jessica M Ochoa1, Oscar Mijares2, Andrea A Acosta2, Xavier Escoto3, Nancy Leon-Rivera2, Joanna D Marshall3, Michael R Sawaya4, Todd O Yeates1.   

Abstract

Bacterial microcompartments are large supramolecular structures comprising an outer proteinaceous shell that encapsulates various enzymes in order to optimize metabolic processes. The outer shells of bacterial microcompartments are made of several thousand protein subunits, generally forming hexameric building blocks based on the canonical bacterial microcompartment (BMC) domain. Among the diverse metabolic types of bacterial microcompartments, the structures of those that use glycyl radical enzymes to metabolize choline have not been adequately characterized. Here, six structures of hexameric shell proteins from type I and type II choline-utilization microcompartments are reported. Sequence and structure analysis reveals electrostatic surface properties that are shared between the four types of shell proteins described here.

Entities:  

Keywords:  BMC; bacterial microcompartments; bacterial organelles; choline; glycyl radicals; shell proteins

Mesh:

Substances:

Year:  2021        PMID: 34473104      PMCID: PMC8411931          DOI: 10.1107/S2053230X21007470

Source DB:  PubMed          Journal:  Acta Crystallogr F Struct Biol Commun        ISSN: 2053-230X            Impact factor:   1.072


  38 in total

Review 1.  Bacterial microcompartments.

Authors:  Cheryl A Kerfeld; Sabine Heinhorst; Gordon C Cannon
Journal:  Annu Rev Microbiol       Date:  2010       Impact factor: 15.500

Review 2.  Protein-based organelles in bacteria: carboxysomes and related microcompartments.

Authors:  Todd O Yeates; Cheryl A Kerfeld; Sabine Heinhorst; Gordon C Cannon; Jessup M Shively
Journal:  Nat Rev Microbiol       Date:  2008-09       Impact factor: 60.633

3.  Structure and mechanisms of a protein-based organelle in Escherichia coli.

Authors:  Shiho Tanaka; Michael R Sawaya; Todd O Yeates
Journal:  Science       Date:  2010-01-01       Impact factor: 47.728

4.  XDS.

Authors:  Wolfgang Kabsch
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2010-01-22

5.  Molecular Dynamics Simulations of Selective Metabolite Transport across the Propanediol Bacterial Microcompartment Shell.

Authors:  Jiyong Park; Sunny Chun; Thomas A Bobik; Kendall N Houk; Todd O Yeates
Journal:  J Phys Chem B       Date:  2017-08-22       Impact factor: 2.991

Review 6.  Bacterial microcompartments and the modular construction of microbial metabolism.

Authors:  Cheryl A Kerfeld; Onur Erbilgin
Journal:  Trends Microbiol       Date:  2014-11-14       Impact factor: 17.079

Review 7.  Bacterial microcompartments.

Authors:  Cheryl A Kerfeld; Clement Aussignargues; Jan Zarzycki; Fei Cai; Markus Sutter
Journal:  Nat Rev Microbiol       Date:  2018-03-05       Impact factor: 60.633

8.  Overview of the CCP4 suite and current developments.

Authors:  Martyn D Winn; Charles C Ballard; Kevin D Cowtan; Eleanor J Dodson; Paul Emsley; Phil R Evans; Ronan M Keegan; Eugene B Krissinel; Andrew G W Leslie; Airlie McCoy; Stuart J McNicholas; Garib N Murshudov; Navraj S Pannu; Elizabeth A Potterton; Harold R Powell; Randy J Read; Alexei Vagin; Keith S Wilson
Journal:  Acta Crystallogr D Biol Crystallogr       Date:  2011-03-18

9.  A taxonomy of bacterial microcompartment loci constructed by a novel scoring method.

Authors:  Seth D Axen; Onur Erbilgin; Cheryl A Kerfeld
Journal:  PLoS Comput Biol       Date:  2014-10-23       Impact factor: 4.475

10.  Encapsulation mechanisms and structural studies of GRM2 bacterial microcompartment particles.

Authors:  Gints Kalnins; Eva-Emilija Cesle; Juris Jansons; Janis Liepins; Anatolij Filimonenko; Kaspars Tars
Journal:  Nat Commun       Date:  2020-01-20       Impact factor: 14.919

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