Literature DB >> 2548199

Template supercoiling during ATP-dependent DNA helix tracking: studies with simian virus 40 large tumor antigen.

L Yang1, C B Jessee, K Lau, H Zhang, L F Liu.   

Abstract

Incubation of topologically relaxed plasmid DNA with simian virus 40 (SV40) large tumor antigen (T antigen), ATP, and eubacterial DNA topoisomerase I resulted in the formation of highly positively supercoiled DNA. Eukaryotic DNA topoisomerase I could not substitute for eubacterial DNA topoisomerase 1 in this reaction. Furthermore, the addition of eukaryotic topoisomerase I to a preincubated reaction mixture containing both T antigen and eubacterial topoisomerase I caused rapid relaxation of the positively supercoiled DNA. These results suggest that SV40 T antigen can introduce topoisomerase-relaxable supercoils into DNA in a reaction coupled to ATP hydrolysis. We interpret the observed T antigen supercoiling reaction in terms of a recently proposed twin-supercoiled-domain model that describes the mechanics of DNA helix-tracking processes. According to this model positive and negative supercoils are generated ahead of and behind the moving SV40 T antigen, respectively. The preferential relaxation of negative supercoils by eubacterial DNA topoisomerase I explains the accumulation of positive supercoils in the DNA template. The supercoiling assay using DNA conformation-specific eubacterial DNA topoisomerase I may be of general use for the detection of ATP-dependent DNA helix-tracking proteins.

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Year:  1989        PMID: 2548199      PMCID: PMC297787          DOI: 10.1073/pnas.86.16.6121

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  25 in total

1.  DNA-DNA gyrase complex: the wrapping of the DNA duplex outside the enzyme.

Authors:  L F Liu; J C Wang
Journal:  Cell       Date:  1978-11       Impact factor: 41.582

2.  Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies.

Authors:  Y P Tsao; H Y Wu; L F Liu
Journal:  Cell       Date:  1989-01-13       Impact factor: 41.582

3.  Eukaryotic DNA topoisomerases: two forms of type I DNA topoisomerases from HeLa cell nuclei.

Authors:  L F Liu; K G Miller
Journal:  Proc Natl Acad Sci U S A       Date:  1981-06       Impact factor: 11.205

4.  Unwinding and rewinding of DNA by the RecBC enzyme.

Authors:  A Taylor; G R Smith
Journal:  Cell       Date:  1980-11       Impact factor: 41.582

5.  Topography of simian virus 40 A protein-DNA complexes: arrangement of protein bound to the origin of replication.

Authors:  P Tegtmeyer; B A Lewton; A L DeLucia; V G Wilson; K Ryder
Journal:  J Virol       Date:  1983-04       Impact factor: 5.103

6.  Regulatory mutants of simian virus 40. Effect of mutations at a T antigen binding site on DNA replication and expression of viral genes.

Authors:  D DiMaio; D Nathans
Journal:  J Mol Biol       Date:  1982-04-15       Impact factor: 5.469

7.  Topography of simian virus 40 A protein-DNA complexes: arrangement of pentanucleotide interaction sites at the origin of replication.

Authors:  A L DeLucia; B A Lewton; R Tjian; P Tegtmeyer
Journal:  J Virol       Date:  1983-04       Impact factor: 5.103

8.  Recombinant genomes which express chloramphenicol acetyltransferase in mammalian cells.

Authors:  C M Gorman; L F Moffat; B H Howard
Journal:  Mol Cell Biol       Date:  1982-09       Impact factor: 4.272

9.  Micrococcus luteus DNA gyrase: active components and a model for its supercoiling of DNA.

Authors:  L F Liu; J C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1978-05       Impact factor: 11.205

10.  The structure of the human histone genes: clustered but not tandemly repeated.

Authors:  N Heintz; M Zernik; R G Roeder
Journal:  Cell       Date:  1981-06       Impact factor: 41.582

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  15 in total

1.  DNA translocation blockage, a general mechanism of cleavage site selection by type I restriction enzymes.

Authors:  P Janscak; M P MacWilliams; U Sandmeier; V Nagaraja; T A Bickle
Journal:  EMBO J       Date:  1999-05-04       Impact factor: 11.598

2.  Speculations on the origin of life and thermophily: review of available information on reverse gyrase suggests that hyperthermophilic procaryotes are not so primitive.

Authors:  P Forterre; F Confalonieri; F Charbonnier; M Duguet
Journal:  Orig Life Evol Biosph       Date:  1995-06       Impact factor: 1.950

3.  Identification of a DNA supercoiling activity in Saccharomyces cerevisiae.

Authors:  H S Koo; K Lau; H Y Wu; L F Liu
Journal:  Nucleic Acids Res       Date:  1992-10-11       Impact factor: 16.971

4.  Transcriptionally driven cruciform formation in vivo.

Authors:  A Dayn; S Malkhosyan; S M Mirkin
Journal:  Nucleic Acids Res       Date:  1992-11-25       Impact factor: 16.971

5.  Transcription-induced conformational change in a topologically closed DNA domain.

Authors:  P Dröge; A Nordheim
Journal:  Nucleic Acids Res       Date:  1991-06-11       Impact factor: 16.971

6.  Replication of bovine papillomavirus type 1 DNA initiates within an E2-responsive enhancer element.

Authors:  L Yang; M Botchan
Journal:  J Virol       Date:  1990-12       Impact factor: 5.103

7.  Archaebacterial reverse gyrase cleavage-site specificity is similar to that of eubacterial DNA topoisomerases I.

Authors:  O I Kovalsky; S A Kozyavkin; A I Slesarev
Journal:  Nucleic Acids Res       Date:  1990-05-11       Impact factor: 16.971

8.  Transcription-driven site-specific DNA recombination in vitro.

Authors:  P Dröge
Journal:  Proc Natl Acad Sci U S A       Date:  1993-04-01       Impact factor: 11.205

9.  ATP-dependent partitioning of the DNA template into supercoiled domains by Escherichia coli UvrAB.

Authors:  H S Koo; L Claassen; L Grossman; L F Liu
Journal:  Proc Natl Acad Sci U S A       Date:  1991-02-15       Impact factor: 11.205

10.  Positive DNA supercoiling generates a chromatin conformation characteristic of highly active genes.

Authors:  M S Lee; W T Garrard
Journal:  Proc Natl Acad Sci U S A       Date:  1991-11-01       Impact factor: 11.205

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