Literature DB >> 2548192

Tn5supF, a 264-base-pair transposon derived from Tn5 for insertion mutagenesis and sequencing DNAs cloned in phage lambda.

S H Phadnis1, H V Huang, D E Berg.   

Abstract

We constructed a derivative of transposon Tn5 called Tn5supF for insertion mutagenesis and sequencing DNAs cloned in phage lambda. This element carries a supF amber-suppressor tRNA gene. Its insertion into lambda can be selected by plaque formation by using nonsuppressing (sup0) Escherichia coli for amber mutant lambda phage and sup0 dnaB-amber E. coli for nonamber lambda phage. Tn5supF is just 264 base pairs long. It transposes efficiently and inserts quasi-randomly into DNA targets. The unique sequences near its termini can be used as primer binding sites for dideoxynucleotide DNA sequencing, thus permitting the direct sequencing of DNAs cloned in phage lambda without subcloning.

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Year:  1989        PMID: 2548192      PMCID: PMC297740          DOI: 10.1073/pnas.86.15.5908

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  31 in total

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Authors:  R D'Ari; A Jaffé-Brachet; D Touati-Schwartz; M B Yarmolinsky
Journal:  J Mol Biol       Date:  1975-05-25       Impact factor: 5.469

2.  Transcriptional and translational initiation sites of IS50. Control of transposase and inhibitor expression.

Authors:  M P Krebs; W S Reznikoff
Journal:  J Mol Biol       Date:  1986-12-20       Impact factor: 5.469

3.  Plasmid cloning vehicles derived from plasmids ColE1, F, R6K, and RK2.

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Journal:  Methods Enzymol       Date:  1979       Impact factor: 1.600

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Authors:  E C Strauss; J A Kobori; G Siu; L E Hood
Journal:  Anal Biochem       Date:  1986-04       Impact factor: 3.365

5.  DNA sequence of the E. coli gyrB gene: application of a new sequencing strategy.

Authors:  T Adachi; M Mizuuchi; E A Robinson; E Appella; M H O'Dea; M Gellert; K Mizuuchi
Journal:  Nucleic Acids Res       Date:  1987-01-26       Impact factor: 16.971

6.  Construction and characterization of the hybrid bacteriophage lambda Charon vectors for DNA cloning.

Authors:  B G Williams; F R Blattner
Journal:  J Virol       Date:  1979-02       Impact factor: 5.103

7.  Sequences essential for transposition at the termini of IS50.

Authors:  C Sasakawa; G F Carle; D E Berg
Journal:  Proc Natl Acad Sci U S A       Date:  1983-12       Impact factor: 11.205

8.  Polarity of Tn5 insertion mutations in Escherichia coli.

Authors:  D E Berg; A Weiss; L Crossland
Journal:  J Bacteriol       Date:  1980-05       Impact factor: 3.490

9.  Sequencing end-labeled DNA with base-specific chemical cleavages.

Authors:  A M Maxam; W Gilbert
Journal:  Methods Enzymol       Date:  1980       Impact factor: 1.600

10.  Specificity of transposon Tn5 insertion.

Authors:  D E Berg; M A Schmandt; J B Lowe
Journal:  Genetics       Date:  1983-12       Impact factor: 4.562

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  14 in total

1.  Target joining of duplicated insertion sequence IS21 is assisted by IstB protein in vitro.

Authors:  S Schmid; B Berger; D Haas
Journal:  J Bacteriol       Date:  1999-04       Impact factor: 3.490

2.  A general system to integrate lacZ fusions into the chromosomes of gram-negative eubacteria: regulation of the Pm promoter of the TOL plasmid studied with all controlling elements in monocopy.

Authors:  B Kessler; V de Lorenzo; K N Timmis
Journal:  Mol Gen Genet       Date:  1992-05

3.  cysQ, a gene needed for cysteine synthesis in Escherichia coli K-12 only during aerobic growth.

Authors:  A F Neuwald; B R Krishnan; I Brikun; S Kulakauskas; K Suziedelis; T Tomcsanyi; T S Leyh; D E Berg
Journal:  J Bacteriol       Date:  1992-01       Impact factor: 3.490

4.  Tn5/IS50 target recognition.

Authors:  I Y Goryshin; J A Miller; Y V Kil; V A Lanzov; W S Reznikoff
Journal:  Proc Natl Acad Sci U S A       Date:  1998-09-01       Impact factor: 11.205

5.  Improved genetic selection for screening bacteriophage libraries by homologous recombination in vivo.

Authors:  D M Kurnit; B Seed
Journal:  Proc Natl Acad Sci U S A       Date:  1990-04       Impact factor: 11.205

6.  A transposon-based strategy for sequencing repetitive DNA in eukaryotic genomes.

Authors:  S E Devine; S L Chissoe; Y Eby; R K Wilson; J D Boeke
Journal:  Genome Res       Date:  1997-05       Impact factor: 9.043

7.  Efficient integration of artificial transposons into plasmid targets in vitro: a useful tool for DNA mapping, sequencing and genetic analysis.

Authors:  S E Devine; J D Boeke
Journal:  Nucleic Acids Res       Date:  1994-09-11       Impact factor: 16.971

8.  Transposon Tn5supF-based reverse genetic method for mutational analysis of Escherichia coli with DNAs cloned in lambda phage.

Authors:  S H Phadnis; S Kulakauskas; B R Krishnan; J Hiemstra; D E Berg
Journal:  J Bacteriol       Date:  1991-01       Impact factor: 3.490

9.  Efficient large-scale sequencing of the Escherichia coli genome: implementation of a transposon- and PCR-based strategy for the analysis of ordered lambda phage clones.

Authors:  H Kasai; S Isono; M Kitakawa; J Mineno; H Akiyama; D M Kurnit; D E Berg; K Isono
Journal:  Nucleic Acids Res       Date:  1992-12-25       Impact factor: 16.971

10.  Tn5 insertion specificity is not influenced by IS50 end sequences in target DNA.

Authors:  J K Lodge; K Weston-Hafer; D E Berg
Journal:  Mol Gen Genet       Date:  1991-08
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