Literature DB >> 25477505

SPASM and twitch domains in S-adenosylmethionine (SAM) radical enzymes.

Tsehai A J Grell1, Peter J Goldman1, Catherine L Drennan2.   

Abstract

S-Adenosylmethionine (SAM, also known as AdoMet) radical enzymes use SAM and a [4Fe-4S] cluster to catalyze a diverse array of reactions. They adopt a partial triose-phosphate isomerase (TIM) barrel fold with N- and C-terminal extensions that tailor the structure of the enzyme to its specific function. One extension, termed a SPASM domain, binds two auxiliary [4Fe-4S] clusters and is present within peptide-modifying enzymes. The first structure of a SPASM-containing enzyme, anaerobic sulfatase-maturating enzyme (anSME), revealed unexpected similarities to two non-SPASM proteins, butirosin biosynthetic enzyme 2-deoxy-scyllo-inosamine dehydrogenase (BtrN) and molybdenum cofactor biosynthetic enzyme (MoaA). The latter two enzymes bind one auxiliary cluster and exhibit a partial SPASM motif, coined a Twitch domain. Here we review the structure and function of auxiliary cluster domains within the SAM radical enzyme superfamily.
© 2015 by The American Society for Biochemistry and Molecular Biology, Inc.

Entities:  

Keywords:  AdoMet; Iron-Sulfur Protein; Post-translational Modification (PTM); Radical; S-Adenosylmethionine (SAM); Structural Biology

Mesh:

Substances:

Year:  2014        PMID: 25477505      PMCID: PMC4326806          DOI: 10.1074/jbc.R114.581249

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  59 in total

1.  Binding of 5'-GTP to the C-terminal FeS cluster of the radical S-adenosylmethionine enzyme MoaA provides insights into its mechanism.

Authors:  Petra Hänzelmann; Hermann Schindelin
Journal:  Proc Natl Acad Sci U S A       Date:  2006-04-21       Impact factor: 11.205

2.  Spectroscopic changes during a single turnover of biotin synthase: destruction of a [2Fe-2S] cluster accompanies sulfur insertion.

Authors:  N B Ugulava; C J Sacanell; J T Jarrett
Journal:  Biochemistry       Date:  2001-07-27       Impact factor: 3.162

3.  Mechanistic investigations of lipoic acid biosynthesis in Escherichia coli: both sulfur atoms in lipoic acid are contributed by the same lipoyl synthase polypeptide.

Authors:  Robert M Cicchillo; Squire J Booker
Journal:  J Am Chem Soc       Date:  2005-03-09       Impact factor: 15.419

4.  A new type of bacterial sulfatase reveals a novel maturation pathway in prokaryotes.

Authors:  Olivier Berteau; Alain Guillot; Alhosna Benjdia; Sylvie Rabot
Journal:  J Biol Chem       Date:  2006-06-09       Impact factor: 5.157

5.  Crystal structure of the S-adenosylmethionine-dependent enzyme MoaA and its implications for molybdenum cofactor deficiency in humans.

Authors:  Petra Hänzelmann; Hermann Schindelin
Journal:  Proc Natl Acad Sci U S A       Date:  2004-08-18       Impact factor: 11.205

6.  Anaerobic sulfatase-maturating enzymes, first dual substrate radical S-adenosylmethionine enzymes.

Authors:  Alhosna Benjdia; Sowmya Subramanian; Jérôme Leprince; Hubert Vaudry; Michael K Johnson; Olivier Berteau
Journal:  J Biol Chem       Date:  2008-04-11       Impact factor: 5.157

7.  Post-translational formylglycine modification of bacterial sulfatases by the radical S-adenosylmethionine protein AtsB.

Authors:  Qinghua Fang; Jianhe Peng; Thomas Dierks
Journal:  J Biol Chem       Date:  2004-01-28       Impact factor: 5.157

8.  Escherichia coli lipoyl synthase binds two distinct [4Fe-4S] clusters per polypeptide.

Authors:  Robert M Cicchillo; Kyung-Hoon Lee; Camelia Baleanu-Gogonea; Natasha M Nesbitt; Carsten Krebs; Squire J Booker
Journal:  Biochemistry       Date:  2004-09-21       Impact factor: 3.162

9.  Synthesis of pyrroloquinoline quinone in vivo and in vitro and detection of an intermediate in the biosynthetic pathway.

Authors:  J S Velterop; E Sellink; J J Meulenberg; S David; I Bulder; P W Postma
Journal:  J Bacteriol       Date:  1995-09       Impact factor: 3.490

10.  A novel amino acid modification in sulfatases that is defective in multiple sulfatase deficiency.

Authors:  B Schmidt; T Selmer; A Ingendoh; K von Figura
Journal:  Cell       Date:  1995-07-28       Impact factor: 41.582

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  56 in total

1.  Electron Paramagnetic Resonance Spectroscopic Identification of the Fe-S Clusters in the SPASM Domain-Containing Radical SAM Enzyme PqqE.

Authors:  Lizhi Tao; Wen Zhu; Judith P Klinman; R David Britt
Journal:  Biochemistry       Date:  2019-12-11       Impact factor: 3.162

2.  Spectroscopic and Electrochemical Characterization of the Mycofactocin Biosynthetic Protein, MftC, Provides Insight into Its Redox Flipping Mechanism.

Authors:  Richard Ayikpoe; Thacien Ngendahimana; Michelle Langton; Sheila Bonitatibus; Lindsey M Walker; Sandra S Eaton; Gareth R Eaton; Maria-Eirini Pandelia; Sean J Elliott; John A Latham
Journal:  Biochemistry       Date:  2019-01-25       Impact factor: 3.162

3.  X-ray and EPR Characterization of the Auxiliary Fe-S Clusters in the Radical SAM Enzyme PqqE.

Authors:  Ian Barr; Troy A Stich; Anthony S Gizzi; Tyler L Grove; Jeffrey B Bonanno; John A Latham; Tyler Chung; Carrie M Wilmot; R David Britt; Steven C Almo; Judith P Klinman
Journal:  Biochemistry       Date:  2018-02-06       Impact factor: 3.162

4.  The unusual structure of Ruminococcin C1 antimicrobial peptide confers clinical properties.

Authors:  Clarisse Roblin; Steve Chiumento; Olivier Bornet; Matthieu Nouailler; Christina S Müller; Katy Jeannot; Christian Basset; Sylvie Kieffer-Jaquinod; Yohann Couté; Stéphane Torelli; Laurent Le Pape; Volker Schünemann; Hamza Olleik; Bruno De La Villeon; Philippe Sockeel; Eric Di Pasquale; Cendrine Nicoletti; Nicolas Vidal; Leonora Poljak; Olga Iranzo; Thierry Giardina; Michel Fons; Estelle Devillard; Patrice Polard; Marc Maresca; Josette Perrier; Mohamed Atta; Françoise Guerlesquin; Mickael Lafond; Victor Duarte
Journal:  Proc Natl Acad Sci U S A       Date:  2020-07-27       Impact factor: 11.205

5.  PqqD is a novel peptide chaperone that forms a ternary complex with the radical S-adenosylmethionine protein PqqE in the pyrroloquinoline quinone biosynthetic pathway.

Authors:  John A Latham; Anthony T Iavarone; Ian Barr; Prerak V Juthani; Judith P Klinman
Journal:  J Biol Chem       Date:  2015-03-27       Impact factor: 5.157

6.  Methods for Expression, Purification, and Characterization of PqqE, a Radical SAM Enzyme in the PQQ Biosynthetic Pathway.

Authors:  Wen Zhu; Ana M Martins; Judith P Klinman
Journal:  Methods Enzymol       Date:  2018       Impact factor: 1.600

7.  Reconstitution and Substrate Specificity of the Thioether-Forming Radical S-Adenosylmethionine Enzyme in Freyrasin Biosynthesis.

Authors:  Timothy W Precord; Nilkamal Mahanta; Douglas A Mitchell
Journal:  ACS Chem Biol       Date:  2019-09-09       Impact factor: 5.100

8.  Carbon-sulfur bond-forming reaction catalysed by the radical SAM enzyme HydE.

Authors:  Roman Rohac; Patricia Amara; Alhosna Benjdia; Lydie Martin; Pauline Ruffié; Adrien Favier; Olivier Berteau; Jean-Marie Mouesca; Juan C Fontecilla-Camps; Yvain Nicolet
Journal:  Nat Chem       Date:  2016-04-04       Impact factor: 24.427

Review 9.  Biogenesis of the peptide-derived redox cofactor pyrroloquinoline quinone.

Authors:  Wen Zhu; Judith P Klinman
Journal:  Curr Opin Chem Biol       Date:  2020-07-27       Impact factor: 8.822

10.  Bioinformatic Mapping of Radical S-Adenosylmethionine-Dependent Ribosomally Synthesized and Post-Translationally Modified Peptides Identifies New Cα, Cβ, and Cγ-Linked Thioether-Containing Peptides.

Authors:  Graham A Hudson; Brandon J Burkhart; Adam J DiCaprio; Christopher J Schwalen; Bryce Kille; Taras V Pogorelov; Douglas A Mitchell
Journal:  J Am Chem Soc       Date:  2019-05-13       Impact factor: 15.419

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