Literature DB >> 25472677

SEER cancer registry biospecimen research: yesterday and tomorrow.

Sean F Altekruse1, Gabriel E Rosenfeld2, Danielle M Carrick2, Emilee J Pressman2, Sheri D Schully2, Leah E Mechanic2, Kathleen A Cronin2, Brenda Y Hernandez3, Charles F Lynch4, Wendy Cozen5, Muin J Khoury6, Lynne T Penberthy2.   

Abstract

The National Cancer Institute's (NCI) Surveillance, Epidemiology, and End Results (SEER) registries have been a source of biospecimens for cancer research for decades. Recently, registry-based biospecimen studies have become more practical, with the expansion of electronic networks for pathology and medical record reporting. Formalin-fixed paraffin-embedded specimens are now used for next-generation sequencing and other molecular techniques. These developments create new opportunities for SEER biospecimen research. We evaluated 31 research articles published during 2005 to 2013 based on authors' confirmation that these studies involved linkage of SEER data to biospecimens. Rather than providing an exhaustive review of all possible articles, our intent was to indicate the breadth of research made possible by such a resource. We also summarize responses to a 2012 questionnaire that was broadly distributed to the NCI intra- and extramural biospecimen research community. This included responses from 30 investigators who had used SEER biospecimens in their research. The survey was not intended to be a systematic sample, but instead to provide anecdotal insight on strengths, limitations, and the future of SEER biospecimen research. Identified strengths of this research resource include biospecimen availability, cost, and annotation of data, including demographic information, stage, and survival. Shortcomings include limited annotation of clinical attributes such as detailed chemotherapy history and recurrence, and timeliness of turnaround following biospecimen requests. A review of selected SEER biospecimen articles, investigator feedback, and technological advances reinforced our view that SEER biospecimen resources should be developed. This would advance cancer biology, etiology, and personalized therapy research. See all the articles in this CEBP Focus section, "Biomarkers, Biospecimens, and New Technologies in Molecular Epidemiology." Cancer Epidemiol Biomarkers Prev; 23(12); 2681-7. ©2014 AACR. ©2014 American Association for Cancer Research.

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Year:  2014        PMID: 25472677      PMCID: PMC4256714          DOI: 10.1158/1055-9965.EPI-14-0490

Source DB:  PubMed          Journal:  Cancer Epidemiol Biomarkers Prev        ISSN: 1055-9965            Impact factor:   4.254


  46 in total

1.  Overview of the SEER-Medicare data: content, research applications, and generalizability to the United States elderly population.

Authors:  Joan L Warren; Carrie N Klabunde; Deborah Schrag; Peter B Bach; Gerald F Riley
Journal:  Med Care       Date:  2002-08       Impact factor: 2.983

2.  Tissues from population-based cancer registries: a novel approach to increasing research potential.

Authors:  Marc T Goodman; Brenda Y Hernandez; Stephen Hewitt; Charles F Lynch; Timothy R Coté; Henry F Frierson; Christopher A Moskaluk; Jeffrey L Killeen; Wendy Cozen; Charles R Key; Limin Clegg; Marsha Reichman; Benjamin F Hankey; Brenda Edwards
Journal:  Hum Pathol       Date:  2005-07       Impact factor: 3.466

3.  Radon, secondhand smoke, glutathione-S-transferase M1 and lung cancer among women.

Authors:  Matthew R Bonner; William P Bennett; Wenying Xiong; Qing Lan; Ross C Brownson; Curtis C Harris; R William Field; Jay H Lubin; Michael C R Alavanja
Journal:  Int J Cancer       Date:  2006-09-15       Impact factor: 7.396

4.  Prevalence of human papillomavirus types in invasive vulvar cancers and vulvar intraepithelial neoplasia 3 in the United States before vaccine introduction.

Authors:  Julia W Gargano; Edward J Wilkinson; Elizabeth R Unger; Martin Steinau; Meg Watson; Youjie Huang; Glenn Copeland; Wendy Cozen; Marc T Goodman; Claudia Hopenhayn; Charles F Lynch; Brenda Y Hernandez; Edward S Peters; Maria Sibug Saber; Christopher W Lyu; Lauren A Sands; Mona Saraiya
Journal:  J Low Genit Tract Dis       Date:  2012-10       Impact factor: 1.925

5.  Loss of LARGE2 disrupts functional glycosylation of α-dystroglycan in prostate cancer.

Authors:  Alison K Esser; Michael R Miller; Qin Huang; Melissa M Meier; Daniel Beltran-Valero de Bernabé; Christopher S Stipp; Kevin P Campbell; Charles F Lynch; Brian J Smith; Michael B Cohen; Michael D Henry
Journal:  J Biol Chem       Date:  2012-12-06       Impact factor: 5.157

6.  Agreement for tumor grade of ovarian carcinoma: analysis of archival tissues from the surveillance, epidemiology, and end results residual tissue repository.

Authors:  Rayna K Matsuno; Mark E Sherman; Kala Visvanathan; Marc T Goodman; Brenda Y Hernandez; Charles F Lynch; Olga B Ioffe; David Horio; Charles Platz; Sean F Altekruse; Ruth M Pfeiffer; William F Anderson
Journal:  Cancer Causes Control       Date:  2013-02-03       Impact factor: 2.506

7.  Expression of kallikrein-related peptidase 7 predicts poor prognosis in patients with unresectable pancreatic ductal adenocarcinoma.

Authors:  Vladimir Iakovlev; Eric R Siegel; Ming-Sound Tsao; Randy S Haun
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2012-05-09       Impact factor: 4.254

8.  Elucidating the landscape of aberrant DNA methylation in hepatocellular carcinoma.

Authors:  Min-Ae Song; Maarit Tiirikainen; Sandi Kwee; Gordon Okimoto; Herbert Yu; Linda L Wong
Journal:  PLoS One       Date:  2013-02-20       Impact factor: 3.240

9.  Choline kinase alpha and hexokinase-2 protein expression in hepatocellular carcinoma: association with survival.

Authors:  Sandi A Kwee; Brenda Hernandez; Owen Chan; Linda Wong
Journal:  PLoS One       Date:  2012-10-05       Impact factor: 3.240

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  23 in total

Review 1.  Moonshot Objectives: Catalyze New Scientific Breakthroughs-Proteogenomics.

Authors:  Karin D Rodland; Paul Piehowski; Richard D Smith
Journal:  Cancer J       Date:  2018 May/Jun       Impact factor: 3.360

2.  Maximizing the Utility of Archival Formalin-Fixed Paraffin-Embedded Blocks for Nucleic Acid Analysis.

Authors:  Sarah R Greytak; Kelly B Engel; Helen M Moore
Journal:  Biopreserv Biobank       Date:  2018-07-13       Impact factor: 2.300

Review 3.  The Surveillance, Epidemiology, and End Results (SEER) Program and Pathology: Toward Strengthening the Critical Relationship.

Authors:  Máire A Duggan; William F Anderson; Sean Altekruse; Lynne Penberthy; Mark E Sherman
Journal:  Am J Surg Pathol       Date:  2016-12       Impact factor: 6.394

4.  Call for Data Standardization: Lessons Learned and Recommendations in an Imaging Study.

Authors:  Amrita Basu; Denise Warzel; Aras Eftekhari; Justin S Kirby; John Freymann; Janice Knable; Ashish Sharma; Paula Jacobs
Journal:  JCO Clin Cancer Inform       Date:  2019-11

5.  ClinGen Cancer Somatic Working Group - standardizing and democratizing access to cancer molecular diagnostic data to drive translational research.

Authors:  Subha Madhavan; Deborah Ritter; Christine Micheel; Shruti Rao; Angshumoy Roy; Dmitriy Sonkin; Matthew Mccoy; Malachi Griffith; Obi L Griffith; Peter Mcgarvey; Shashikant Kulkarni
Journal:  Pac Symp Biocomput       Date:  2018

6.  Pathology Laboratory Policies and Procedures for Releasing Diagnostic Tissue for Cancer Research.

Authors:  Yao Yuan; Alison L Van Dyke; Valentina I Petkov; Sarah Hussey; Radim Moravec; Sean F Altekruse; Mayra Sandoval; Rosemary D Cress; Lloyd M Mueller; Alan Mogi; Brenda Y Hernandez; Freda R Selk; Charles F Lynch; Thomas C Tucker; Mary Anne Lynch; Christina Lefante; Xiao-Cheng Wu; Carol Sweeney; Jennifer A Doherty; Lynne S Penberthy
Journal:  Arch Pathol Lab Med       Date:  2021-02-01       Impact factor: 5.686

7.  The biorepository portal toolkit: an honest brokered, modular service oriented software tool set for biospecimen-driven translational research.

Authors:  Alex S Felmeister; Aaron J Masino; Tyler J Rivera; Adam C Resnick; Jeffrey W Pennington
Journal:  BMC Genomics       Date:  2016-08-18       Impact factor: 3.969

8.  Optimization for Sequencing and Analysis of Degraded FFPE-RNA Samples.

Authors:  Yelena Levin; Keyur Talsania; Bao Tran; Jyoti Shetty; Yongmei Zhao; Monika Mehta
Journal:  J Vis Exp       Date:  2020-06-08       Impact factor: 1.355

Review 9.  Interferon-γ and Colorectal Cancer: an up-to date.

Authors:  Christoforos Kosmidis; Konstantinos Sapalidis; Triantafyllia Koletsa; Maria Kosmidou; Christoforos Efthimiadis; George Anthimidis; Nikolaos Varsamis; Nikolaos Michalopoulos; Charilaos Koulouris; Stefanos Atmatzidis; Lazaros Liavas; Titika-Marina Strati; Georgios Koimtzis; Alexandros Tsakalidis; Stylianos Mantalovas; Katerina Zarampouka; Maria Florou; Dimitrios E Giannakidis; Eleni Georgakoudi; Sofia Baka; Paul Zarogoulidis; Yan-Gao Man; Isaac Kesisoglou
Journal:  J Cancer       Date:  2018-01-01       Impact factor: 4.207

10.  Regulatory Roles of Dclk1 in Epithelial Mesenchymal Transition and Cancer Stem Cells.

Authors:  P Chandrakesan; J Panneerselvam; D Qu; N Weygant; R May; M S Bronze; C W Houchen
Journal:  J Carcinog Mutagen       Date:  2016-03-07
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