Literature DB >> 25469841

Optimizing membrane-protein biogenesis through nonoptimal-codon usage.

Alexey S Morgunov1, M Madan Babu1.   

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Year:  2014        PMID： 25469841     DOI： 10.1038/nsmb.2926

Source DB:  PubMed          Journal:  Nat Struct Mol Biol        ISSN： 1545-9985            Impact factor:   15.369


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  28 in total

1.  Structure of the signal recognition particle interacting with the elongation-arrested ribosome.

Authors:  Mario Halic; Thomas Becker; Martin R Pool; Christian M T Spahn; Robert A Grassucci; Joachim Frank; Roland Beckmann
Journal:  Nature       Date:  2004-02-26       Impact factor: 49.962

Review 2.  Specialized ribosomes: a new frontier in gene regulation and organismal biology.

Authors:  Shifeng Xue; Maria Barna
Journal:  Nat Rev Mol Cell Biol       Date:  2012-05-23       Impact factor: 94.444

Review 3.  Understanding the contribution of synonymous mutations to human disease.

Authors:  Zuben E Sauna; Chava Kimchi-Sarfaty
Journal:  Nat Rev Genet       Date:  2011-08-31       Impact factor: 53.242

Review 4.  Speeding with control: codon usage, tRNAs, and ribosomes.

Authors:  Eva Maria Novoa; Lluís Ribas de Pouplana
Journal:  Trends Genet       Date:  2012-08-23       Impact factor: 11.639

Review 5.  Signal recognition particle: an essential protein-targeting machine.

Authors:  David Akopian; Kuang Shen; Xin Zhang; Shu-ou Shan
Journal:  Annu Rev Biochem       Date:  2013-02-13       Impact factor: 23.643

6.  Structure of the yeast mitochondrial large ribosomal subunit.

Authors:  Alexey Amunts; Alan Brown; Xiao-Chen Bai; Jose L Llácer; Tanweer Hussain; Paul Emsley; Fei Long; Garib Murshudov; Sjors H W Scheres; V Ramakrishnan
Journal:  Science       Date:  2014-03-28       Impact factor: 47.728

7.  Genome-wide analysis in vivo of translation with nucleotide resolution using ribosome profiling.

Authors:  Nicholas T Ingolia; Sina Ghaemmaghami; John R S Newman; Jonathan S Weissman
Journal:  Science       Date:  2009-02-12       Impact factor: 47.728

8.  Asymmetric mRNA localization contributes to fidelity and sensitivity of spatially localized systems.

Authors:  Robert J Weatheritt; Toby J Gibson; M Madan Babu
Journal:  Nat Struct Mol Biol       Date:  2014-08-24       Impact factor: 15.369

9.  Evolution. The hidden codes that shape protein evolution.

Authors:  Robert J Weatheritt; M Madan Babu
Journal:  Science       Date:  2013-12-13       Impact factor: 47.728

10.  mRNA-programmed translation pauses in the targeting of E. coli membrane proteins.

Authors:  Nir Fluman; Sivan Navon; Eitan Bibi; Yitzhak Pilpel
Journal:  Elife       Date:  2014-08-18       Impact factor: 8.140
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  8 in total

1.  Optimizing assembly and production of native bispecific antibodies by codon de-optimization.

Authors:  Giovanni Magistrelli; Yves Poitevin; Florence Schlosser; Guillemette Pontini; Pauline Malinge; Soheila Josserand; Marie Corbier; Nicolas Fischer
Journal:  MAbs       Date:  2017 Feb/Mar       Impact factor: 5.857

2.  Correcting the F508del-CFTR variant by modulating eukaryotic translation initiation factor 3-mediated translation initiation.

Authors:  Darren M Hutt; Salvatore Loguercio; Daniela Martino Roth; Andrew I Su; William E Balch
Journal:  J Biol Chem       Date:  2018-07-13       Impact factor: 5.157

3.  Ribosomal Stalk Protein Silencing Partially Corrects the ΔF508-CFTR Functional Expression Defect.

Authors:  Guido Veit; Kathryn Oliver; Pirjo M Apaja; Doranda Perdomo; Aurélien Bidaud-Meynard; Sheng-Ting Lin; Jingyu Guo; Mert Icyuz; Eric J Sorscher; John L Hartman; Gergely L Lukacs
Journal:  PLoS Biol       Date:  2016-05-11       Impact factor: 8.029

4.  On the Spatial Organization of mRNA, Plasmids, and Ribosomes in a Bacterial Host Overexpressing Membrane Proteins.

Authors:  Lieke A van Gijtenbeek; Andrew Robinson; Antoine M van Oijen; Bert Poolman; Jan Kok
Journal:  PLoS Genet       Date:  2016-12-15       Impact factor: 5.917

5.  Deciphering the co-adaptation of codon usage between respiratory coronaviruses and their human host uncovers candidate therapeutics for COVID-19.

Authors:  Komi Nambou; Manawa Anakpa
Journal:  Infect Genet Evol       Date:  2020-07-22       Impact factor: 3.342

6.  Codon Bias Can Determine Sorting of a Potassium Channel Protein.

Authors:  Anja J Engel; Marina Kithil; Markus Langhans; Oliver Rauh; Matea Cartolano; James L Van Etten; Anna Moroni; Gerhard Thiel
Journal:  Cells       Date:  2021-05-07       Impact factor: 7.666

7.  Predicting synonymous codon usage and optimizing the heterologous gene for expression in E. coli.

Authors:  Jian Tian; Yaru Yan; Qingxia Yue; Xiaoqing Liu; Xiaoyu Chu; Ningfeng Wu; Yunliu Fan
Journal:  Sci Rep       Date:  2017-08-30       Impact factor: 4.379

8.  Evolutionary analysis of polyproline motifs in Escherichia coli reveals their regulatory role in translation.

Authors:  Fei Qi; Magdalena Motz; Kirsten Jung; Jürgen Lassak; Dmitrij Frishman
Journal:  PLoS Comput Biol       Date:  2018-02-01       Impact factor: 4.475
  8 in total

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