Literature DB >> 24337281

Evolution. The hidden codes that shape protein evolution.

Robert J Weatheritt1, M Madan Babu.   

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Year:  2013        PMID： 24337281      PMCID： PMC4167339          DOI： 10.1126/science.1248425

Source DB:  PubMed          Journal:  Science        ISSN： 0036-8075            Impact factor:   47.728


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3.  A synonymous variant in IRGM alters a binding site for miR-196 and causes deregulation of IRGM-dependent xenophagy in Crohn's disease.

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Journal:  Nat Genet       Date:  2011-01-30       Impact factor: 38.330

Review 4.  Understanding the contribution of synonymous mutations to human disease.

Authors:  Zuben E Sauna; Chava Kimchi-Sarfaty
Journal:  Nat Rev Genet       Date:  2011-08-31       Impact factor: 53.242

5.  Structural biology. Versatility from protein disorder.

Authors:  M Madan Babu; Richard W Kriwacki; Rohit V Pappu
Journal:  Science       Date:  2012-09-21       Impact factor: 47.728

Review 6.  Synonymous but not the same: the causes and consequences of codon bias.

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7.  Locating protein-coding sequences under selection for additional, overlapping functions in 29 mammalian genomes.

Authors:  Michael F Lin; Pouya Kheradpour; Stefan Washietl; Brian J Parker; Jakob S Pedersen; Manolis Kellis
Journal:  Genome Res       Date:  2011-10-12       Impact factor: 9.043

8.  Evidence for a trade-off between translational efficiency and splicing regulation in determining synonymous codon usage in Drosophila melanogaster.

Authors:  Tobias Warnecke; Laurence D Hurst
Journal:  Mol Biol Evol       Date:  2007-09-28       Impact factor: 16.240

9.  A periodic pattern of mRNA secondary structure created by the genetic code.

Authors:  Svetlana A Shabalina; Aleksey Y Ogurtsov; Nikolay A Spiridonov
Journal:  Nucleic Acids Res       Date:  2006-05-08       Impact factor: 16.971

10.  Evolutionary conservation of codon optimality reveals hidden signatures of cotranslational folding.

Authors:  Sebastian Pechmann; Judith Frydman
Journal:  Nat Struct Mol Biol       Date:  2012-12-23       Impact factor: 15.369
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2.  Optimizing membrane-protein biogenesis through nonoptimal-codon usage.

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Journal:  Nat Struct Mol Biol       Date:  2014-12       Impact factor: 15.369

3.  Splice junctions are constrained by protein disorder.

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4.  Significance of duon mutations in cancer genomes.

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5.  Predictive analytics of environmental adaptability in multi-omic network models.

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6.  Adjacent Codons Act in Concert to Modulate Translation Efficiency in Yeast.

Authors:  Caitlin E Gamble; Christina E Brule; Kimberly M Dean; Stanley Fields; Elizabeth J Grayhack
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Review 7.  Different types of secondary information in the genetic code.

Authors:  Richard J Maraia; James R Iben
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8.  Different evolutionary patterns of SNPs between domains and unassigned regions in human protein-coding sequences.

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Journal:  Mol Genet Genomics       Date:  2016-01-30       Impact factor: 3.291

9.  Introns Structure Patterns of Variation in Nucleotide Composition in Arabidopsis thaliana and Rice Protein-Coding Genes.

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10.  Detection and sequence/structure mapping of biophysical constraints to protein variation in saturated mutational libraries and protein sequence alignments with a dedicated server.

Authors:  Luciano A Abriata; Christophe Bovigny; Matteo Dal Peraro
Journal:  BMC Bioinformatics       Date:  2016-06-17       Impact factor: 3.169
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