Literature DB >> 25468983

Increased subtlety of transcription factor binding increases complexity of genome regulation.

Peter H von Hippel1.   

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Year:  2014        PMID： 25468983      PMCID： PMC4267337          DOI： 10.1073/pnas.1418978111

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN： 0027-8424            Impact factor:   11.205


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  17 in total

Review 1.  How do site-specific DNA-binding proteins find their targets?

Authors:  Stephen E Halford; John F Marko
Journal:  Nucleic Acids Res       Date:  2004-06-03       Impact factor: 16.971

2.  Structure and flexibility adaptation in nonspecific and specific protein-DNA complexes.

Authors:  Charalampos G Kalodimos; Nikolaos Biris; Alexandre M J J Bonvin; Marc M Levandoski; Marc Guennuegues; Rolf Boelens; Robert Kaptein
Journal:  Science       Date:  2004-07-16       Impact factor: 47.728

Review 3.  Facilitated target location in biological systems.

Authors:  P H von Hippel; O G Berg
Journal:  J Biol Chem       Date:  1989-01-15       Impact factor: 5.157

Review 4.  From "simple" DNA-protein interactions to the macromolecular machines of gene expression.

Authors:  Peter H von Hippel
Journal:  Annu Rev Biophys Biomol Struct       Date:  2007

5.  The nucleotide sequence of the lac operator.

Authors:  W Gilbert; A Maxam
Journal:  Proc Natl Acad Sci U S A       Date:  1973-12       Impact factor: 11.205

6.  Equilibrium and kinetic studies of Escherichia coli lac repressor-inducer interactions.

Authors:  S L Laiken; C A Gross; P H Von Hippel
Journal:  J Mol Biol       Date:  1972-04-28       Impact factor: 5.469

7.  Non-specific DNA binding of genome regulating proteins as a biological control mechanism: I. The lac operon: equilibrium aspects.

Authors:  P H von Hippel; A Revzin; C A Gross; A C Wang
Journal:  Proc Natl Acad Sci U S A       Date:  1974-12       Impact factor: 11.205

8.  The lac repressor-operator interaction. 3. Kinetic studies.

Authors:  A D Riggs; S Bourgeois; M Cohn
Journal:  J Mol Biol       Date:  1970-11-14       Impact factor: 5.469

9.  Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

Authors:  O G Berg; R B Winter; P H von Hippel
Journal:  Biochemistry       Date:  1981-11-24       Impact factor: 3.162

10.  Nonspecific DNA binding of genome-regulating proteins as a biological control mechanism: measurement of DNA-bound Escherichia coli lac repressor in vivo.

Authors:  Y Kao-Huang; A Revzin; A P Butler; P O'Conner; D W Noble; P H von Hippel
Journal:  Proc Natl Acad Sci U S A       Date:  1977-10       Impact factor: 11.205
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  4 in total

1.  A quantitative understanding of lac repressor's binding specificity and flexibility.

Authors:  Zheng Zuo; Yiming Chang; Gary D Stormo
Journal:  Quant Biol       Date:  2015-05-30

2.  Transcription Factor Binding in Embryonic Stem Cells Is Constrained by DNA Sequence Repeat Symmetry.

Authors:  Matan Goldshtein; Meir Mellul; Gai Deutch; Masahiko Imashimizu; Koh Takeuchi; Eran Meshorer; Oren Ram; David B Lukatsky
Journal:  Biophys J       Date:  2020-02-15       Impact factor: 4.033

3.  Imputation for transcription factor binding predictions based on deep learning.

Authors:  Qian Qin; Jianxing Feng
Journal:  PLoS Comput Biol       Date:  2017-02-24       Impact factor: 4.475

4.  Recurrent Neural Network for Predicting Transcription Factor Binding Sites.

Authors:  Zhen Shen; Wenzheng Bao; De-Shuang Huang
Journal:  Sci Rep       Date:  2018-10-15       Impact factor: 4.379
  4 in total

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