Literature DB >> 25016437

Chromatin: a capacitor of acetate for integrated regulation of gene expression and cell physiology.

Siavash K Kurdistani1.   

Abstract

Cancer tissues with lower global levels of histone acetylation display significantly increased rate of tumor recurrence or cancer-related mortality. The function global regulation of histone acetylation serves for the cell or how lower levels of histone acetylation may contribute to a more aggressive cancer phenotype has been unclear. Chromatin and histone modifications are currently thought to regulate only DNA-based processes. However, recent findings have revealed a novel function for global histone acetylation in direct regulation of cellular physiology. I will discuss how chromatin, by regulating the cellular flux of acetate, may integrate control of cellular physiologic state with gene expression and help explain the observations in cancer tissues.
Copyright © 2014 Elsevier Ltd. All rights reserved.

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Year:  2014        PMID: 25016437      PMCID: PMC4253552          DOI: 10.1016/j.gde.2014.06.002

Source DB:  PubMed          Journal:  Curr Opin Genet Dev        ISSN: 0959-437X            Impact factor:   5.578


  39 in total

Review 1.  Dynamics of histone acetylation in vivo. A function for acetylation turnover?

Authors:  Jakob H Waterborg
Journal:  Biochem Cell Biol       Date:  2002       Impact factor: 3.626

2.  Acid treatment of melanoma cells selects for invasive phenotypes.

Authors:  Raymond E Moellering; Kvar C Black; Chetan Krishnamurty; Brenda K Baggett; Phillip Stafford; Matthew Rain; Robert A Gatenby; Robert J Gillies
Journal:  Clin Exp Metastasis       Date:  2008-02-27       Impact factor: 5.150

Review 3.  Sensors and regulators of intracellular pH.

Authors:  Joseph R Casey; Sergio Grinstein; John Orlowski
Journal:  Nat Rev Mol Cell Biol       Date:  2009-12-09       Impact factor: 94.444

4.  Interstitial pH and pO2 gradients in solid tumors in vivo: high-resolution measurements reveal a lack of correlation.

Authors:  G Helmlinger; F Yuan; M Dellian; R K Jain
Journal:  Nat Med       Date:  1997-02       Impact factor: 53.440

5.  The yeast potassium transporter TRK2 is able to substitute for TRK1 in its biological function under low K and low pH conditions.

Authors:  Bertha Michel; Carlos Lozano; Miriam Rodríguez; Roberto Coria; Jorge Ramírez; Antonio Peña
Journal:  Yeast       Date:  2006-06       Impact factor: 3.239

Review 6.  Tumor pH and its measurement.

Authors:  Xiaomeng Zhang; Yuxiang Lin; Robert J Gillies
Journal:  J Nucl Med       Date:  2010-07-21       Impact factor: 10.057

7.  Regulators of cellular levels of histone acetylation in Saccharomyces cerevisiae.

Authors:  Weimin Peng; Cynthia Togawa; Kangling Zhang; Siavash K Kurdistani
Journal:  Genetics       Date:  2008-05       Impact factor: 4.562

8.  Global levels of histone modifications predict prognosis in different cancers.

Authors:  David B Seligson; Steve Horvath; Matthew A McBrian; Vei Mah; Hong Yu; Sheila Tze; Qun Wang; David Chia; Lee Goodglick; Siavash K Kurdistani
Journal:  Am J Pathol       Date:  2009-04-06       Impact factor: 4.307

9.  Genome-wide binding map of the histone deacetylase Rpd3 in yeast.

Authors:  Siavash K Kurdistani; Daniel Robyr; Saeed Tavazoie; Michael Grunstein
Journal:  Nat Genet       Date:  2002-06-24       Impact factor: 38.330

10.  Global turnover of histone post-translational modifications and variants in human cells.

Authors:  Barry M Zee; Rebecca S Levin; Peter A DiMaggio; Benjamin A Garcia
Journal:  Epigenetics Chromatin       Date:  2010-12-06       Impact factor: 4.954

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  16 in total

Review 1.  Epigenetic control in skin development, homeostasis and injury repair.

Authors:  Sangjo Kang; Gopal Chovatiya; Tudorita Tumbar
Journal:  Exp Dermatol       Date:  2019-02-12       Impact factor: 3.960

2.  Stochastic tuning of gene expression enables cellular adaptation in the absence of pre-existing regulatory circuitry.

Authors:  Peter L Freddolino; Jamie Yang; Amir Momen-Roknabadi; Saeed Tavazoie
Journal:  Elife       Date:  2018-04-05       Impact factor: 8.140

3.  A ketogenic diet rescues hippocampal memory defects in a mouse model of Kabuki syndrome.

Authors:  Joel S Benjamin; Genay O Pilarowski; Giovanni A Carosso; Li Zhang; David L Huso; Loyal A Goff; Hilary J Vernon; Kasper D Hansen; Hans T Bjornsson
Journal:  Proc Natl Acad Sci U S A       Date:  2016-12-20       Impact factor: 11.205

Review 4.  Metabolism and epigenetics: a link cancer cells exploit.

Authors:  Alessandro Carrer; Kathryn E Wellen
Journal:  Curr Opin Biotechnol       Date:  2014-11-29       Impact factor: 9.740

Review 5.  Sink into the Epigenome: Histones as Repositories That Influence Cellular Metabolism.

Authors:  Cunqi Ye; Benjamin P Tu
Journal:  Trends Endocrinol Metab       Date:  2018-07-11       Impact factor: 12.015

6.  Cell cycle progression is regulated by intertwined redox oscillators.

Authors:  Jorgelindo da Veiga Moreira; Sabine Peres; Jean-Marc Steyaert; Erwan Bigan; Loïc Paulevé; Marcel Levy Nogueira; Laurent Schwartz
Journal:  Theor Biol Med Model       Date:  2015-05-29       Impact factor: 2.432

7.  A rapid method for quantifying free and bound acetate based on alkylation and GC-MS analysis.

Authors:  Sergey Tumanov; Vinay Bulusu; Eyal Gottlieb; Jurre J Kamphorst
Journal:  Cancer Metab       Date:  2016-09-02

8.  The Redox Status of Cancer Cells Supports Mechanisms behind the Warburg Effect.

Authors:  Jorgelindo da Veiga Moreira; Minoo Hamraz; Mohammad Abolhassani; Erwan Bigan; Sabine Pérès; Loïc Paulevé; Marcel Levy Nogueira; Jean-Marc Steyaert; Laurent Schwartz
Journal:  Metabolites       Date:  2016-10-03

Review 9.  Undercover: gene control by metabolites and metabolic enzymes.

Authors:  Jan A van der Knaap; C Peter Verrijzer
Journal:  Genes Dev       Date:  2016-11-01       Impact factor: 11.361

Review 10.  Physical forces modulate cell differentiation and proliferation processes.

Authors:  Laurent Schwartz; Jorgelindo da Veiga Moreira; Mario Jolicoeur
Journal:  J Cell Mol Med       Date:  2017-11-30       Impact factor: 5.310

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