Literature DB >> 25460806

The bacterial nucleoid: nature, dynamics and sister segregation.

Nancy Kleckner1, Jay K Fisher, Mathieu Stouf, Martin A White, David Bates, Guillaume Witz.   

Abstract

Recent studies reveal that the bacterial nucleoid has a defined, self-adherent shape and an underlying longitudinal organization and comprises a viscoelastic matrix. Within this shape, mobility is enhanced by ATP-dependent processes and individual loci can undergo ballistic off-equilibrium movements. In Escherichia coli, two global dynamic nucleoid behaviors emerge pointing to nucleoid-wide accumulation and relief of internal stress. Sister segregation begins with local splitting of individual loci, which is delayed at origin, terminus and specialized interstitial snap regions. Globally, as studied in several systems, segregation is a multi-step process in which internal nucleoid state plays critical roles that involve both compaction and expansion. The origin and terminus regions undergo specialized programs partially driven by complex ATP burning mechanisms such as a ParAB Brownian ratchet and a septum-associated FtsK motor. These recent findings reveal strong, direct parallels among events in different systems and between bacterial nucleoids and mammalian chromosomes with respect to physical properties, internal organization and dynamic behaviors.

Entities:  

Mesh:

Year:  2014        PMID: 25460806      PMCID: PMC4359759          DOI: 10.1016/j.mib.2014.10.001

Source DB:  PubMed          Journal:  Curr Opin Microbiol        ISSN: 1369-5274            Impact factor:   7.934


  69 in total

1.  Nonthermal ATP-dependent fluctuations contribute to the in vivo motion of chromosomal loci.

Authors:  Stephanie C Weber; Andrew J Spakowitz; Julie A Theriot
Journal:  Proc Natl Acad Sci U S A       Date:  2012-04-19       Impact factor: 11.205

2.  The Escherichia coli SMC complex, MukBEF, shapes nucleoid organization independently of DNA replication.

Authors:  Anjana Badrinarayanan; Christian Lesterlin; Rodrigo Reyes-Lamothe; David Sherratt
Journal:  J Bacteriol       Date:  2012-06-29       Impact factor: 3.490

3.  Evidence for a DNA-relay mechanism in ParABS-mediated chromosome segregation.

Authors:  Hoong Chuin Lim; Ivan Vladimirovich Surovtsev; Bruno Gabriel Beltran; Fang Huang; Jörg Bewersdorf; Christine Jacobs-Wagner
Journal:  Elife       Date:  2014-05-23       Impact factor: 8.140

4.  The three-dimensional architecture of a bacterial genome and its alteration by genetic perturbation.

Authors:  Mark A Umbarger; Esteban Toro; Matthew A Wright; Gregory J Porreca; Davide Baù; Sun-Hae Hong; Michael J Fero; Lihua J Zhu; Marc A Marti-Renom; Harley H McAdams; Lucy Shapiro; Job Dekker; George M Church
Journal:  Mol Cell       Date:  2011-10-21       Impact factor: 17.970

5.  A propagating ATPase gradient drives transport of surface-confined cellular cargo.

Authors:  Anthony G Vecchiarelli; Keir C Neuman; Kiyoshi Mizuuchi
Journal:  Proc Natl Acad Sci U S A       Date:  2014-02-24       Impact factor: 11.205

6.  Persistent super-diffusive motion of Escherichia coli chromosomal loci.

Authors:  Avelino Javer; Nathan J Kuwada; Zhicheng Long; Vincenzo G Benza; Kevin D Dorfman; Paul A Wiggins; Pietro Cicuta; Marco Cosentino Lagomarsino
Journal:  Nat Commun       Date:  2014-05-30       Impact factor: 14.919

7.  3D trajectories adopted by coding and regulatory DNA elements: first-passage times for genomic interactions.

Authors:  Joseph S Lucas; Yaojun Zhang; Olga K Dudko; Cornelis Murre
Journal:  Cell       Date:  2014-07-03       Impact factor: 41.582

8.  A MatP-divisome interaction coordinates chromosome segregation with cell division in E. coli.

Authors:  Olivier Espéli; Romain Borne; Pauline Dupaigne; Axel Thiel; Emmanuelle Gigant; Romain Mercier; Frédéric Boccard
Journal:  EMBO J       Date:  2012-05-11       Impact factor: 11.598

Review 9.  Bacterial chromosome segregation.

Authors:  Christophe Possoz; Ivan Junier; Olivier Espeli
Journal:  Front Biosci (Landmark Ed)       Date:  2012-01-01

10.  Long-range chromosome organization in E. coli: a site-specific system isolates the Ter macrodomain.

Authors:  Axel Thiel; Michèle Valens; Isabelle Vallet-Gely; Olivier Espéli; Frédéric Boccard
Journal:  PLoS Genet       Date:  2012-04-19       Impact factor: 5.917

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  31 in total

1.  Bacterial chromosome organization by collective dynamics of SMC condensins.

Authors:  Christiaan A Miermans; Chase P Broedersz
Journal:  J R Soc Interface       Date:  2018-10-17       Impact factor: 4.118

Review 2.  Compaction and control-the role of chromosome-organizing proteins in Streptomyces.

Authors:  Marcin J Szafran; Dagmara Jakimowicz; Marie A Elliot
Journal:  FEMS Microbiol Rev       Date:  2020-11-24       Impact factor: 16.408

Review 3.  Fundamental principles in bacterial physiology-history, recent progress, and the future with focus on cell size control: a review.

Authors:  Suckjoon Jun; Fangwei Si; Rami Pugatch; Matthew Scott
Journal:  Rep Prog Phys       Date:  2018-01-09

4.  The bacterial protein Hfq: Stable modifications and growth phase-dependent changes in SPAM profiles.

Authors:  Stanley F Troung; Maxim V Sukhodolets
Journal:  J Chromatogr B Analyt Technol Biomed Life Sci       Date:  2021-09-30       Impact factor: 3.318

5.  Species-specific supercoil dynamics of the bacterial nucleoid.

Authors:  N Patrick Higgins
Journal:  Biophys Rev       Date:  2016-07-20

Review 6.  Bacterial chromosome organization and segregation.

Authors:  Anjana Badrinarayanan; Tung B K Le; Michael T Laub
Journal:  Annu Rev Cell Dev Biol       Date:  2015       Impact factor: 13.827

7.  Lattice Models of Bacterial Nucleoids.

Authors:  David S Goodsell; Ludovic Autin; Arthur J Olson
Journal:  J Phys Chem B       Date:  2018-01-25       Impact factor: 2.991

Review 8.  Mechanisms for Chromosome Segregation in Bacteria.

Authors:  Christos Gogou; Aleksandre Japaridze; Cees Dekker
Journal:  Front Microbiol       Date:  2021-06-16       Impact factor: 5.640

9.  Rapid pairing and resegregation of distant homologous loci enables double-strand break repair in bacteria.

Authors:  Anjana Badrinarayanan; Tung B K Le; Michael T Laub
Journal:  J Cell Biol       Date:  2015-08-03       Impact factor: 10.539

10.  CcrZ is a pneumococcal spatiotemporal cell cycle regulator that interacts with FtsZ and controls DNA replication by modulating the activity of DnaA.

Authors:  Clement Gallay; Stefano Sanselicio; Mary E Anderson; Young Min Soh; Xue Liu; Gro A Stamsås; Simone Pelliciari; Renske van Raaphorst; Julien Dénéréaz; Morten Kjos; Heath Murray; Stephan Gruber; Alan D Grossman; Jan-Willem Veening
Journal:  Nat Microbiol       Date:  2021-08-09       Impact factor: 17.745

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