Literature DB >> 25437882

A comparison of non-integrating reprogramming methods.

Thorsten M Schlaeger1, Laurence Daheron2, Thomas R Brickler2, Samuel Entwisle2, Karrie Chan3, Amelia Cianci3, Alexander DeVine3, Andrew Ettenger3, Kelly Fitzgerald3, Michelle Godfrey3, Dipti Gupta3, Jade McPherson3, Prerana Malwadkar3, Manav Gupta3, Blair Bell3, Akiko Doi4, Namyoung Jung5, Xin Li5, Maureen S Lynes2, Emily Brookes3, Anne B C Cherry6, Didem Demirbas7, Alexander M Tsankov8, Leonard I Zon1, Lee L Rubin9, Andrew P Feinberg5, Alexander Meissner8, Chad A Cowan10, George Q Daley11.   

Abstract

Human induced pluripotent stem cells (hiPSCs) are useful in disease modeling and drug discovery, and they promise to provide a new generation of cell-based therapeutics. To date there has been no systematic evaluation of the most widely used techniques for generating integration-free hiPSCs. Here we compare Sendai-viral (SeV), episomal (Epi) and mRNA transfection mRNA methods using a number of criteria. All methods generated high-quality hiPSCs, but significant differences existed in aneuploidy rates, reprogramming efficiency, reliability and workload. We discuss the advantages and shortcomings of each approach, and present and review the results of a survey of a large number of human reprogramming laboratories on their independent experiences and preferences. Our analysis provides a valuable resource to inform the use of specific reprogramming methods for different laboratories and different applications, including clinical translation.

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Year:  2014        PMID: 25437882      PMCID: PMC4329913          DOI: 10.1038/nbt.3070

Source DB:  PubMed          Journal:  Nat Biotechnol        ISSN: 1087-0156            Impact factor:   54.908


  37 in total

1.  Live cell imaging distinguishes bona fide human iPS cells from partially reprogrammed cells.

Authors:  Elayne M Chan; Sutheera Ratanasirintrawoot; In-Hyun Park; Philip D Manos; Yuin-Han Loh; Hongguang Huo; Justine D Miller; Odelya Hartung; Junsung Rho; Tan A Ince; George Q Daley; Thorsten M Schlaeger
Journal:  Nat Biotechnol       Date:  2009-10-11       Impact factor: 54.908

2.  A more efficient method to generate integration-free human iPS cells.

Authors:  Keisuke Okita; Yasuko Matsumura; Yoshiko Sato; Aki Okada; Asuka Morizane; Satoshi Okamoto; Hyenjong Hong; Masato Nakagawa; Koji Tanabe; Ken-ichi Tezuka; Toshiyuki Shibata; Takahiro Kunisada; Masayo Takahashi; Jun Takahashi; Hiroh Saji; Shinya Yamanaka
Journal:  Nat Methods       Date:  2011-04-03       Impact factor: 28.547

3.  Generation of induced pluripotent stem cells with CytoTune, a non-integrating Sendai virus.

Authors:  Pauline T Lieu; Andrew Fontes; Mohan C Vemuri; Chad C Macarthur
Journal:  Methods Mol Biol       Date:  2013

4.  Dynamic changes in the copy number of pluripotency and cell proliferation genes in human ESCs and iPSCs during reprogramming and time in culture.

Authors:  Louise C Laurent; Igor Ulitsky; Ileana Slavin; Ha Tran; Andrew Schork; Robert Morey; Candace Lynch; Julie V Harness; Sunray Lee; Maria J Barrero; Sherman Ku; Marina Martynova; Ruslan Semechkin; Vasiliy Galat; Joel Gottesfeld; Juan Carlos Izpisua Belmonte; Chuck Murry; Hans S Keirstead; Hyun-Sook Park; Uli Schmidt; Andrew L Laslett; Franz-Josef Muller; Caroline M Nievergelt; Ron Shamir; Jeanne F Loring
Journal:  Cell Stem Cell       Date:  2011-01-07       Impact factor: 24.633

5.  Reprogramming of human somatic cells to pluripotency with defined factors.

Authors:  In-Hyun Park; Rui Zhao; Jason A West; Akiko Yabuuchi; Hongguang Huo; Tan A Ince; Paul H Lerou; M William Lensch; George Q Daley
Journal:  Nature       Date:  2007-12-23       Impact factor: 49.962

6.  Generation of human-induced pluripotent stem cells.

Authors:  In-Hyun Park; Paul H Lerou; Rui Zhao; Hongguang Huo; George Q Daley
Journal:  Nat Protoc       Date:  2008       Impact factor: 13.491

7.  The developmental potential of iPSCs is greatly influenced by reprogramming factor selection.

Authors:  Yosef Buganim; Styliani Markoulaki; Niek van Wietmarschen; Heather Hoke; Tao Wu; Kibibi Ganz; Batool Akhtar-Zaidi; Yupeng He; Brian J Abraham; David Porubsky; Elisabeth Kulenkampff; Dina A Faddah; Linyu Shi; Qing Gao; Sovan Sarkar; Malkiel Cohen; Johanna Goldmann; Joseph R Nery; Matthew D Schultz; Joseph R Ecker; Andrew Xiao; Richard A Young; Peter M Lansdorp; Rudolf Jaenisch
Journal:  Cell Stem Cell       Date:  2014-09-04       Impact factor: 24.633

8.  Somatic coding mutations in human induced pluripotent stem cells.

Authors:  Athurva Gore; Zhe Li; Ho-Lim Fung; Jessica E Young; Suneet Agarwal; Jessica Antosiewicz-Bourget; Isabel Canto; Alessandra Giorgetti; Mason A Israel; Evangelos Kiskinis; Je-Hyuk Lee; Yuin-Han Loh; Philip D Manos; Nuria Montserrat; Athanasia D Panopoulos; Sergio Ruiz; Melissa L Wilbert; Junying Yu; Ewen F Kirkness; Juan Carlos Izpisua Belmonte; Derrick J Rossi; James A Thomson; Kevin Eggan; George Q Daley; Lawrence S B Goldstein; Kun Zhang
Journal:  Nature       Date:  2011-03-03       Impact factor: 49.962

9.  Efficient generation of integration-free ips cells from human adult peripheral blood using BCL-XL together with Yamanaka factors.

Authors:  Rui-Jun Su; David J Baylink; Amanda Neises; Jason B Kiroyan; Xianmei Meng; Kimberly J Payne; Benjamin Tschudy-Seney; Yuyou Duan; Nancy Appleby; Mary Kearns-Jonker; Daila S Gridley; Jun Wang; K-H William Lau; Xiao-Bing Zhang
Journal:  PLoS One       Date:  2013-05-21       Impact factor: 3.240

10.  A systematic evaluation of integration free reprogramming methods for deriving clinically relevant patient specific induced pluripotent stem (iPS) cells.

Authors:  Pollyanna A Goh; Sara Caxaria; Catharina Casper; Cecilia Rosales; Thomas T Warner; Pete J Coffey; Amit C Nathwani
Journal:  PLoS One       Date:  2013-11-26       Impact factor: 3.240

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  176 in total

1.  Self-Destruct Genetic Switch to Safeguard iPS Cells.

Authors:  Zoltán Ivics
Journal:  Mol Ther       Date:  2015-09       Impact factor: 11.454

2.  2'Fluoro Modification Differentially Modulates the Ability of RNAs to Activate Pattern Recognition Receptors.

Authors:  Youngju Lee; Johannes H Urban; Li Xu; Bruce A Sullenger; Jaewoo Lee
Journal:  Nucleic Acid Ther       Date:  2016-01-20       Impact factor: 5.486

3.  Integration Free Derivation of Human Induced Pluripotent Stem Cells Using Laminin 521 Matrix.

Authors:  Elias Uhlin; Ana Marin Navarro; Harriet Rönnholm; Kelly Day; Malin Kele; Anna Falk
Journal:  J Vis Exp       Date:  2017-07-07       Impact factor: 1.355

4.  Human Induced Pluripotent Stem Cell Production and Expansion from Blood using a Non-Integrating Viral Reprogramming Vector.

Authors:  Arun Sharma; Michael Mücke; Christine E Seidman
Journal:  Curr Protoc Mol Biol       Date:  2018-04

5.  Design, Assembly, Production, and Transfection of Synthetic Modified mRNA.

Authors:  Sanders Oh; John A Kessler
Journal:  Methods       Date:  2017-11-07       Impact factor: 3.608

6.  RNA-based Reprogramming of Human Primary Fibroblasts into Induced Pluripotent Stem Cells.

Authors:  Patrick S McGrath; Nicole Diette; Igor Kogut; Ganna Bilousova
Journal:  J Vis Exp       Date:  2018-11-26       Impact factor: 1.355

7.  Direct Reprogramming of Human Primordial Germ Cells into Induced Pluripotent Stem Cells: Efficient Generation of Genetically Engineered Germ Cells.

Authors:  Faith A Bazley; Cyndi F Liu; Xuan Yuan; Haiping Hao; Angelo H All; Alejandro De Los Angeles; Elias T Zambidis; John D Gearhart; Candace L Kerr
Journal:  Stem Cells Dev       Date:  2015-08-10       Impact factor: 3.272

Review 8.  Pluripotent stem cell-based therapy for Parkinson's disease: Current status and future prospects.

Authors:  Kai-C Sonntag; Bin Song; Nayeon Lee; Jin Hyuk Jung; Young Cha; Pierre Leblanc; Carolyn Neff; Sek Won Kong; Bob S Carter; Jeffrey Schweitzer; Kwang-Soo Kim
Journal:  Prog Neurobiol       Date:  2018-04-11       Impact factor: 11.685

Review 9.  An Insight into DNA-free Reprogramming Approaches to Generate Integration-free Induced Pluripotent Stem Cells for Prospective Biomedical Applications.

Authors:  Manash P Borgohain; Krishna Kumar Haridhasapavalan; Chandrima Dey; Poulomi Adhikari; Rajkumar P Thummer
Journal:  Stem Cell Rev Rep       Date:  2019-04       Impact factor: 5.739

Review 10.  Modulation of human allogeneic and syngeneic pluripotent stem cells and immunological implications for transplantation.

Authors:  S D Sackett; M E Brown; D M Tremmel; T Ellis; W J Burlingham; J S Odorico
Journal:  Transplant Rev (Orlando)       Date:  2016-02-10       Impact factor: 3.943

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